Non-Coding RNA Search

Ss1.1-Pig4-TMW8029A06.5

Sequence:


               
               TTTAAAATATATTTATAAACTCTATTTGGTTTATGGACAAAAAGACATGTGTTTTTTGCC
TTTTGACATTAGCATCATGTAAAAGTGTCTGTCTGGTTCTTTGGGTGATTCAGTGGAGTT
AAAGCTATTTGAAAAACATCATTTTTTTCCAGATCTCGACATTGTTAGTCTTTTAAAATC
GAGGTGTTCTCTTCTTTTGGGGGAATCAGGAATAATCACACCAGAAAAGGAGCTAAAAGT
CAGTGTGGCAGGGGGAACCCAGCCACTCCTGCTGGCAAAAGAAGAGGATGTGGCAACAAA
AAGATCAAAACCTACAGAGGACAGTAAATTCTGTCACGAACAGGTAAATGTGCTTTTTTT
CCCTTTGCTGTATAAACATGTTTTTTTTTTTTAATTGTTGTCCTTGATAACCCAAGAGCC
TCCAAGCTATTCCATGCTATTGAAATATATGTAGATACTCTAATTGGCAAGGAAGTGAAC
CCTTGGTATGACTTCTAATGCTCTGAAGCCATCAAAATCCATGAACTAATCGTGGTCATG
TTTATTCCATATTTTCCAGTTCTATCAGTGTCCTTATTGTAACTACAATAGTAGGGACCA
AAGTCGTATCCAGATGCATGTCCTGTCACAGCACTCGGTACAGCCTGTCATCTGCTGTCC
CCTTTGCCAGGACGTCCTCAGCAACAAAATGCACCTCCAGCTGCATCTGACGCATTTGCA
CAGTGTGTCTCCGGATTGTGTGGAGAAGCTGCTTATGACAGTAAGGACATTGAATGTTGA
TGCATGTGTGACATAATCCCTTTATATCCCCTGTGCCCCATACATAAGTAATTGCTCAAT
AAATTGTTCTTCAAAGAATCGCTTAAGCAGAAACCTTTAGAGGCTCCCGCTTGCAATATT
CATTGGGATTTGAGCTGTAGGCTTTCTTCCTGTAAGTGGTTTATGCTTTCTTGACGCAGG
TGAAAGTCCCATGGATGACAAAAGTATGGCGGGTCTTGACGACTCAAAGGCTGCATAAGT
TGAAAAAGGTTTTGCAGGAAGCCTCCAGTCCGGTTCCTCAAGAAACCAACAGCAGCACAG
ATAACAAACCCTACAAGTGCAGCATCTGCAATGTTGCATACAGCCAAAGCTCGACGTTGG
AAATCCATATGAGGTCCGTGCTCCACCAGACAAAGGCTAGGGCTGCAAAGCTGGAGCCCA
GCAGCCACGTGGTCAGTGGGCACAGCGCCGCCAACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAAATATATTTATAAACTCTATTTGGTTTATGGACAAAAAGACATGTGTTTTTTGCC
TTTTGACATTAGCATCATGTAAAAGTGTCTGTCTGGTTCTTTGGGTGATTCAGTGGAGTT
AAAGCTATTTGAAAAACATCATTTTTTTCCAGATCTCGACATTGTTAGTCTTTTAAAATC
GAGGTGTTCTCTTCTTTTGGGGGAATCAGGAATAATCACACCAGAAAAGGAGCTAAAAGT
CAGTGTGGCAGGGGGAACCCAGCCACTCCTGCTGGCAAAAGAAGAGGATGTGGCAACAAA
AAGATCAAAACCTACAGAGGACAGTAAATTCTGTCACGAACAGGTAAATGTGCTTTTTTT
CCCTTTGCTGTATAAACATGTTTTTTTTTTTTAATTGTTGTCCTTGATAACCCAAGAGCC
TCCAAGCTATTCCATGCTATTGAAATATATGTAGATACTCTAATTGGCAAGGAAGTGAAC
CCTTGGTATGACTTCTAATGCTCTGAAGCCATCAAAATCCATGAACTAATCGTGGTCATG
TTTATTCCATATTTTCCAGTTCTATCAGTGTCCTTATTGTAACTACAATAGTAGGGACCA
AAGTCGTATCCAGATGCATGTCCTGTCACAGCACTCGGTACAGCCTGTCATCTGCTGTCC
CCTTTGCCAGGACGTCCTCAGCAACAAAATGCACCTCCAGCTGCATCTGACGCATTTGCA
CAGTGTGTCTCCGGATTGTGTGGAGAAGCTGCTTATGACAGTAAGGACATTGAATGTTGA
TGCATGTGTGACATAATCCCTTTATATCCCCTGTGCCCCATACATAAGTAATTGCTCAAT
AAATTGTTCTTCAAAGAATCGCTTAAGCAGAAACCTTTAGAGGCTCCCGCTTGCAATATT
CATTGGGATTTGAGCTGTAGGCTTTCTTCCTGTAAGTGGTTTATGCTTTCTTGACGCAGG
TGAAAGTCCCATGGATGACAAAAGTATGGCGGGTCTTGACGACTCAAAGGCTGCATAAGT
TGAAAAAGGTTTTGCAGGAAGCCTCCAGTCCGGTTCCTCAAGAAACCAACAGCAGCACAG
ATAACAAACCCTACAAGTGCAGCATCTGCAATGTTGCATACAGCCAAAGCTCGACGTTGG
AAATCCATATGAGGTCCGTGCTCCACCAGACAAAGGCTAGGGCTGCAAAGCTGGAGCCCA
GCAGCCACGTGGTCAGTGGGCACAGCGCCGCCAACG

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.506309
               

               
               194-352, - strand, RNAz p=0.914581
               

               
               592-791, - strand, RNAz p=0.836243
               

               
               1050-1204, - strand, RNAz p=0.92698

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.506309
               

               
               194-352, - strand, RNAz p=0.914581
               

               
               592-791, - strand, RNAz p=0.836243
               

               
               1050-1204, - strand, RNAz p=0.92698

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-801, gnl|bosTau2|chr28 (18665598-18664787)
               

               
               1-801, gnl|Hg17|chr8 (77923581-77924544)
               

               
               1-801, gnl|Mm7|chr3 (5402106-5402865)
               


               
               1011-1204, gnl|bosTau2|chr28 (18662592-18662399)
               

               
               1011-1204, gnl|Hg17|chr8 (77926408-77926598)
               

               
               1011-1204, gnl|Mm7|chr3 (5405114-5405304)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-801, gnl|bosTau2|chr28 (18665598-18664787)
               

               
               1-801, gnl|Hg17|chr8 (77923581-77924544)
               

               
               1-801, gnl|Mm7|chr3 (5402106-5402865)
               


               
               1011-1204, gnl|bosTau2|chr28 (18662592-18662399)
               

               
               1011-1204, gnl|Hg17|chr8 (77926408-77926598)
               

               
               1011-1204, gnl|Mm7|chr3 (5405114-5405304)

	1-119, - strand, RNAz p=0.506309
	194-352, - strand, RNAz p=0.914581
	592-791, - strand, RNAz p=0.836243
	1050-1204, - strand, RNAz p=0.92698

	1-801, gnl\|bosTau2\|chr28 (18665598-18664787)
	1-801, gnl\|Hg17\|chr8 (77923581-77924544)
	1-801, gnl\|Mm7\|chr3 (5402106-5402865)

	1011-1204, gnl\|bosTau2\|chr28 (18662592-18662399)
	1011-1204, gnl\|Hg17\|chr8 (77926408-77926598)
	1011-1204, gnl\|Mm7\|chr3 (5405114-5405304)