Non-Coding RNA Search

Ss1.1-Pig4-TMW8029B10.3

Sequence:


               
               GCGGCTCGAGGTGATATTGAACATCTGTTTCAACATAATAGGAAATTAAAGTCGGTGGGT
GAAGAACATGAAGTACTGACAAAATCCTACATGGGACTTCTTCAGAGAAATGACACTGCT
GAAAAGAATAACAAAGATTTACAGGTCACATGTGATTCTCTGAATAAACAAATTGAGACA
GTGAAAAAGTTGAATGATGCACTCAACCAACAAAATGAAAAAACTCTTGCCCAATTAATA
GAGAAAGAAAAACAGAGAAAAGAAGTACAGAACCAACTAATATACAGAGAGTGTAAGCTA
ACAAAATTGGAACAAAAGGTAAAAGTACAAGAAGAAAAGATTAAAGTCTTACAAAGAGAA
AGGGAAGATAAAGAAGAAACCATTGGTGTCCTTAGAAAAGAATTAAATAGAACAGAACAC
ATAAGAAAAGAATTGAGCATTAAGGCTTCCTCCTTAGAGGTTCAAAAGGCCCAATTAGAA
AGTCGTTTGGAAGAGAAGGAGTCCCTGGTGAAACTTCAGCAAGAGGAGTTGAATAAACAC
TCTCATATGATAGCCATGATCCACAGTTTAAGTGGTGGAAAAATAAGTCCAGAAACTGTG
AATCTCAGTATATAGACATTATGTATTTATTTACTTGGTAATTGGGGTAGGGAAGGTAAT
ATGTGAGTCCAGAATAAGAAGAGATTATTGTAATAATTACATATTAAAGAACTTGATTTG
ATACATGTTTTTAATTGGTCTTAAAGTTTTACTTTGTGTTTTTGGATTATATTGCTTAAA
GCTATTATTGGGTCCATTATTTTAGAATACTGTTATTAACTTCCATTATTGTTTCAATTA
AGTTTTTTCTTTTCTTTTCCTTAGGAGCTTTCCACACTTTTTTTTGTTTGCTTAATTTAT
TATCATCTGTGCTTAGATATTTTAGAATCAGACATCAGTAAACGTATTCATTTTTTTTAT
GGAGTTCCCGGCGAATCAATATGGGATCAGTGGATATGTGCAGCACTAGGAAGCAGGTTC
AACCTCCATCTTGGCACAGTGGATTAAAGGATCCAGCAATGCTGCATATACAGGATAGGT
TGTAACTGAGGCTAGGATATGATCCCTGGCATGGGAACTACATATGATGAAGAACGGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGGTGATATTGAACATCTGTTTCAACATAATAGGAAATTAAAGTCGGTGGGT
GAAGAACATGAAGTACTGACAAAATCCTACATGGGACTTCTTCAGAGAAATGACACTGCT
GAAAAGAATAACAAAGATTTACAGGTCACATGTGATTCTCTGAATAAACAAATTGAGACA
GTGAAAAAGTTGAATGATGCACTCAACCAACAAAATGAAAAAACTCTTGCCCAATTAATA
GAGAAAGAAAAACAGAGAAAAGAAGTACAGAACCAACTAATATACAGAGAGTGTAAGCTA
ACAAAATTGGAACAAAAGGTAAAAGTACAAGAAGAAAAGATTAAAGTCTTACAAAGAGAA
AGGGAAGATAAAGAAGAAACCATTGGTGTCCTTAGAAAAGAATTAAATAGAACAGAACAC
ATAAGAAAAGAATTGAGCATTAAGGCTTCCTCCTTAGAGGTTCAAAAGGCCCAATTAGAA
AGTCGTTTGGAAGAGAAGGAGTCCCTGGTGAAACTTCAGCAAGAGGAGTTGAATAAACAC
TCTCATATGATAGCCATGATCCACAGTTTAAGTGGTGGAAAAATAAGTCCAGAAACTGTG
AATCTCAGTATATAGACATTATGTATTTATTTACTTGGTAATTGGGGTAGGGAAGGTAAT
ATGTGAGTCCAGAATAAGAAGAGATTATTGTAATAATTACATATTAAAGAACTTGATTTG
ATACATGTTTTTAATTGGTCTTAAAGTTTTACTTTGTGTTTTTGGATTATATTGCTTAAA
GCTATTATTGGGTCCATTATTTTAGAATACTGTTATTAACTTCCATTATTGTTTCAATTA
AGTTTTTTCTTTTCTTTTCCTTAGGAGCTTTCCACACTTTTTTTTGTTTGCTTAATTTAT
TATCATCTGTGCTTAGATATTTTAGAATCAGACATCAGTAAACGTATTCATTTTTTTTAT
GGAGTTCCCGGCGAATCAATATGGGATCAGTGGATATGTGCAGCACTAGGAAGCAGGTTC
AACCTCCATCTTGGCACAGTGGATTAAAGGATCCAGCAATGCTGCATATACAGGATAGGT
TGTAACTGAGGCTAGGATATGATCCCTGGCATGGGAACTACATATGATGAAGAACGGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17389198|gb|AAH17659.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17389198|gb|AAH17659.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               99-623, - strand, RNAz p=0.526686

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               99-623, - strand, RNAz p=0.526686

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               99-221, gnl|bosTau2|chr1 (28404688-28404810)
               

               
               99-221, gnl|Hg17|chr3 (109756035-109755913)
               

               
               99-221, gnl|Mm7|chr16 (48776658-48776780)
               


               
               440-963, gnl|bosTau2|chr1 (28407434-28407944)
               

               
               440-963, gnl|Hg17|chr3 (109752861-109752309)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-221, gnl|bosTau2|chr1 (28404688-28404810)
               

               
               99-221, gnl|Hg17|chr3 (109756035-109755913)
               

               
               99-221, gnl|Mm7|chr16 (48776658-48776780)
               


               
               440-963, gnl|bosTau2|chr1 (28407434-28407944)
               

               
               440-963, gnl|Hg17|chr3 (109752861-109752309)

	99-221, gnl\|bosTau2\|chr1 (28404688-28404810)
	99-221, gnl\|Hg17\|chr3 (109756035-109755913)
	99-221, gnl\|Mm7\|chr16 (48776658-48776780)

	440-963, gnl\|bosTau2\|chr1 (28407434-28407944)
	440-963, gnl\|Hg17\|chr3 (109752861-109752309)