Non-Coding RNA Search

Ss1.1-Pig4-TMW8029E14.5

Sequence:


               
               CAAGGATGTGACTATTGAAAGTCAGACTTGATGCTTAGATCTTGATCTTTCTGAATACAA
CATCAAAAGGTAGCTTAACCTCTCTAAAAACAGGAAGAATATTACCCTCACTTGTCTTAG
TCAAATCCCATCTCGACCAGTTAGATTCCTTCGGGCTTTAAAACCCACCGACAGTTGCAA
TAGCTATGTTTTTTTTCACTTTTTGCCCTTCATAAGTAGAGCTGAGCATGAATTTTGAGA
AAATTTGCATGCCAGTTCCATGACTGATCTCAATGAACTGTTTAACCTTCTCTGTGCCTC
TTTTCCCTTCTGTAAAATGAGTCAAAAATGGGACGGCTAGATGACATACATTGTGCCTCT
AGTGATTCTAGGAACTAGTTTCTGTCCCAGAATCTAATTGTCCCAGATCAGATTTATTGA
GAGATAACAAAGATAGATATTACAGTCAAGATCCACATTTCAGAGCGTATGCCCTGACCT
ATGTCCATGACAGATACAGATATTGAGAACAGACCTCAAATTTTTTTTGAGACTGTGCCC
CAGGCAACTCCTCTCAACCAAATAAGATCAGGCCCACTTGTCTTCCTGGCATGGCAGAGT
CAGATTTATGAAAGACAGAGTATGAAACTTTTCTCACCCAGTTGTGAACATGAAGTAGCT
TTCCACAGATCACTTTTCAAAGGGTAGGTTGGAAGAATACCTTGACCTGTTTTCATTCTT
GGTAGTGACTTTAACTAGCAGTTCACTTAGCTCCCAACTGCATTGCTTTTTGTTGTTTCT
CAGAAATAAATCCATTATTTTGTAGCTGACAGTCACAGTGATTTATATGACAGCTTCTAA
TCCAAGAGTTTTAGGAGAGGGTTACCTTACAAGTGCTGTGGTCTTTAGGAGAGGCGTGTA
GCCACTATTCACCCACAACTTGGCTGGTGTGGGGAGGGGTTGTGGGTGGGAATAGTCCTG
TCCATCCCTCCTTTCAGCCTCTGATCTTCTGACCTTTTGGTTCCTCTCATTTGCTGAACC
CCAGGGCAAAGGAACATGATTTATCTGGTCCTTAAAGGTCAGTCTCCCCCCTCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGATGTGACTATTGAAAGTCAGACTTGATGCTTAGATCTTGATCTTTCTGAATACAA
CATCAAAAGGTAGCTTAACCTCTCTAAAAACAGGAAGAATATTACCCTCACTTGTCTTAG
TCAAATCCCATCTCGACCAGTTAGATTCCTTCGGGCTTTAAAACCCACCGACAGTTGCAA
TAGCTATGTTTTTTTTCACTTTTTGCCCTTCATAAGTAGAGCTGAGCATGAATTTTGAGA
AAATTTGCATGCCAGTTCCATGACTGATCTCAATGAACTGTTTAACCTTCTCTGTGCCTC
TTTTCCCTTCTGTAAAATGAGTCAAAAATGGGACGGCTAGATGACATACATTGTGCCTCT
AGTGATTCTAGGAACTAGTTTCTGTCCCAGAATCTAATTGTCCCAGATCAGATTTATTGA
GAGATAACAAAGATAGATATTACAGTCAAGATCCACATTTCAGAGCGTATGCCCTGACCT
ATGTCCATGACAGATACAGATATTGAGAACAGACCTCAAATTTTTTTTGAGACTGTGCCC
CAGGCAACTCCTCTCAACCAAATAAGATCAGGCCCACTTGTCTTCCTGGCATGGCAGAGT
CAGATTTATGAAAGACAGAGTATGAAACTTTTCTCACCCAGTTGTGAACATGAAGTAGCT
TTCCACAGATCACTTTTCAAAGGGTAGGTTGGAAGAATACCTTGACCTGTTTTCATTCTT
GGTAGTGACTTTAACTAGCAGTTCACTTAGCTCCCAACTGCATTGCTTTTTGTTGTTTCT
CAGAAATAAATCCATTATTTTGTAGCTGACAGTCACAGTGATTTATATGACAGCTTCTAA
TCCAAGAGTTTTAGGAGAGGGTTACCTTACAAGTGCTGTGGTCTTTAGGAGAGGCGTGTA
GCCACTATTCACCCACAACTTGGCTGGTGTGGGGAGGGGTTGTGGGTGGGAATAGTCCTG
TCCATCCCTCCTTTCAGCCTCTGATCTTCTGACCTTTTGGTTCCTCTCATTTGCTGAACC
CCAGGGCAAAGGAACATGATTTATCTGGTCCTTAAAGGTCAGTCTCCCCCCTCCCAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               441-549, - strand, RNAz p=0.826667
               

               
               868-1001, + strand, RNAz p=0.999996

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               441-549, - strand, RNAz p=0.826667
               

               
               868-1001, + strand, RNAz p=0.999996

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               182-413, gnl|bosTau2|chr3 (20508728-20508493)
               

               
               182-413, gnl|Hg17|chr1 (119400991-119401250)
               

               
               182-413, gnl|Mm7|chr3 (98930721-98930478)
               


               
               441-688, gnl|bosTau2|chr3 (20508493-20508236)
               

               
               441-688, gnl|Hg17|chr1 (119401250-119401506)
               


               
               717-1039, gnl|bosTau2|chr3 (20508231-20507936)
               

               
               717-1039, gnl|Hg17|chr1 (119401518-119401889)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               182-413, gnl|bosTau2|chr3 (20508728-20508493)
               

               
               182-413, gnl|Hg17|chr1 (119400991-119401250)
               

               
               182-413, gnl|Mm7|chr3 (98930721-98930478)
               


               
               441-688, gnl|bosTau2|chr3 (20508493-20508236)
               

               
               441-688, gnl|Hg17|chr1 (119401250-119401506)
               


               
               717-1039, gnl|bosTau2|chr3 (20508231-20507936)
               

               
               717-1039, gnl|Hg17|chr1 (119401518-119401889)

	441-549, - strand, RNAz p=0.826667
	868-1001, + strand, RNAz p=0.999996

	182-413, gnl\|bosTau2\|chr3 (20508728-20508493)
	182-413, gnl\|Hg17\|chr1 (119400991-119401250)
	182-413, gnl\|Mm7\|chr3 (98930721-98930478)

	441-688, gnl\|bosTau2\|chr3 (20508493-20508236)
	441-688, gnl\|Hg17\|chr1 (119401250-119401506)

	717-1039, gnl\|bosTau2\|chr3 (20508231-20507936)
	717-1039, gnl\|Hg17\|chr1 (119401518-119401889)