Non-Coding RNA Search

Ss1.1-Pig4-TMW8029E22.5

Sequence:


               
               ACGGTATACTGCTCTGGTCACCCTCATGACACAGTATATTAAATTTGCTGGCGACTCTCT
GAAGAGGCTGGAAGAGGAGGAGTCACTGGATGAAGAAAAGAAAGAGCATGTTGAGAAAGC
CAAAGAATTACAGAAATGGGTATCCAGTATCAGCAAGACATTGAGAGATGGAGAGAAGGC
TGGCAGGTCCTCCTTGTCCAGGCCAAAGATTTCCAGTGAGGAAATATCAGTCAAGAAGGA
ACAGTTATCTGAAGCACTGCAAACCATGCAGCTCTTTCTGGCTAAACATGGAGACAAAAT
GACAGATGAAGAACGAATGGAGTTAGAAAAACAAGTGAAAACTCTGCAAGAGAGCTACAG
TGTATTCTTCAGTGAATCCCTGAAACAGCTACAGCAGCTACAAACCTCGGCAGAGATAAA
GGTAGAGGAGAAGCTGGATAAAGTGATTGCGGGCACCGTTGACCGGAGCACGGGAGAGGT
CCTGTCCATCTTCCAGGCGGTCCTGAGAGGCCTCGTGGATTACGACACCGGGATACGACT
GCTCGAGACCCAGCTGCTGATTTCCGGCCTCATCTCCCCAGCGTTAAGAAAATGCTTTGA
CCTCAAAGATGCCCAGAGCCACGGCCTTATTGATGAGCAAGTTCTGAGCCACCTCCAAGA
ACTCAACGAGGCGAAGGCAGTGATGTCCGCCGTGTCGCCCGCCACTGTTCCCGTGCTGGA
TGCCCTGGCTAAAGGGGTGATCTCAGAACCCACGGCCATCAGGGTCCTTGAGATCCTGCT
TTCCACGGGCTCTCTGGTTATTCCGGCCACAGGAGAGCAGCTGACCCTGCAGAAGGCCTT
CCAGCAGCACTGGATTTCCTCCGCGTTGTTTTCTAAAATCCTGGAAAGGCAAAATACGTG
TAAAGATCTGATTGACCCCTCCACCTCCGAGAAGGTGTCTTTACTGGATCTCCTGCAGAG
AAGCGTTTTGCAGGAAAACACTGGGGTGCGGCTTCTCCCTGTGAGGCCTCAAGAAGGAGG
CAGGATAACGTTGAAAGGTGGGAGAAGCATAAGCATTTTGAGGGCCGCCCACGAAGGTCT
CGTAGACCGTGAAACCATGTTCCGCTTGTTGGGCGCACAGCTGCTCTCTGGGGGGCTGAT
CGACGCCACGTCTGGCCGGAGGCTGACCGTGGAGGAAGCCGTGGCAGAGGGGGTGATGGA
CAGGGACACTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGTATACTGCTCTGGTCACCCTCATGACACAGTATATTAAATTTGCTGGCGACTCTCT
GAAGAGGCTGGAAGAGGAGGAGTCACTGGATGAAGAAAAGAAAGAGCATGTTGAGAAAGC
CAAAGAATTACAGAAATGGGTATCCAGTATCAGCAAGACATTGAGAGATGGAGAGAAGGC
TGGCAGGTCCTCCTTGTCCAGGCCAAAGATTTCCAGTGAGGAAATATCAGTCAAGAAGGA
ACAGTTATCTGAAGCACTGCAAACCATGCAGCTCTTTCTGGCTAAACATGGAGACAAAAT
GACAGATGAAGAACGAATGGAGTTAGAAAAACAAGTGAAAACTCTGCAAGAGAGCTACAG
TGTATTCTTCAGTGAATCCCTGAAACAGCTACAGCAGCTACAAACCTCGGCAGAGATAAA
GGTAGAGGAGAAGCTGGATAAAGTGATTGCGGGCACCGTTGACCGGAGCACGGGAGAGGT
CCTGTCCATCTTCCAGGCGGTCCTGAGAGGCCTCGTGGATTACGACACCGGGATACGACT
GCTCGAGACCCAGCTGCTGATTTCCGGCCTCATCTCCCCAGCGTTAAGAAAATGCTTTGA
CCTCAAAGATGCCCAGAGCCACGGCCTTATTGATGAGCAAGTTCTGAGCCACCTCCAAGA
ACTCAACGAGGCGAAGGCAGTGATGTCCGCCGTGTCGCCCGCCACTGTTCCCGTGCTGGA
TGCCCTGGCTAAAGGGGTGATCTCAGAACCCACGGCCATCAGGGTCCTTGAGATCCTGCT
TTCCACGGGCTCTCTGGTTATTCCGGCCACAGGAGAGCAGCTGACCCTGCAGAAGGCCTT
CCAGCAGCACTGGATTTCCTCCGCGTTGTTTTCTAAAATCCTGGAAAGGCAAAATACGTG
TAAAGATCTGATTGACCCCTCCACCTCCGAGAAGGTGTCTTTACTGGATCTCCTGCAGAG
AAGCGTTTTGCAGGAAAACACTGGGGTGCGGCTTCTCCCTGTGAGGCCTCAAGAAGGAGG
CAGGATAACGTTGAAAGGTGGGAGAAGCATAAGCATTTTGAGGGCCGCCCACGAAGGTCT
CGTAGACCGTGAAACCATGTTCCGCTTGTTGGGCGCACAGCTGCTCTCTGGGGGGCTGAT
CGACGCCACGTCTGGCCGGAGGCTGACCGTGGAGGAAGCCGTGGCAGAGGGGGTGATGGA
CAGGGACACTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               951-1070, + strand, RNAz p=0.524637

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               951-1070, + strand, RNAz p=0.524637

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               78-220, gnl|bosTau2|chr23 (1567923-1567781)
               

               
               78-220, gnl|Hg17|chr6 (56587243-56587101)
               

               
               78-220, gnl|Mm7|chr1 (34407238-34407380)
               


               
               432-1212, gnl|bosTau2|chr23 (1561931-1561151)
               

               
               432-1212, gnl|Hg17|chr6 (56582103-56581323)
               

               
               432-1212, gnl|Mm7|chr1 (34411194-34411974)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-220, gnl|bosTau2|chr23 (1567923-1567781)
               

               
               78-220, gnl|Hg17|chr6 (56587243-56587101)
               

               
               78-220, gnl|Mm7|chr1 (34407238-34407380)
               


               
               432-1212, gnl|bosTau2|chr23 (1561931-1561151)
               

               
               432-1212, gnl|Hg17|chr6 (56582103-56581323)
               

               
               432-1212, gnl|Mm7|chr1 (34411194-34411974)

	78-220, gnl\|bosTau2\|chr23 (1567923-1567781)
	78-220, gnl\|Hg17\|chr6 (56587243-56587101)
	78-220, gnl\|Mm7\|chr1 (34407238-34407380)

	432-1212, gnl\|bosTau2\|chr23 (1561931-1561151)
	432-1212, gnl\|Hg17\|chr6 (56582103-56581323)
	432-1212, gnl\|Mm7\|chr1 (34411194-34411974)