Non-Coding RNA Search

Ss1.1-Pig4-TMW8029G20.3

Sequence:


               
               AAGACCTCCCTCCCAAAAAAAAAACAAAAAAACAAAACTAAAACCCACAAAACAGTAGAT
AGAGAACATGAGTCTCTTGAGATCGATGTTATTTCAGACCAACCCAGTCCCCTCCCATCT
CTACAGAAAGTCTTTTCTTCTTGGAATACCACATTGGCCTAAAGTAAACTCAGAATTACA
AAGATCTTAAGACCCAAGGCAGTTTTGACCATTACCTTCTGAGACTATAGGAGATAAAGA
CAAGAGAAAAATCGTGTGTGTGTCTGTGTCTGTGTCTGTGTCTTTATCTTTTTAGGGCTG
CACCCGCAGCACCTAGAGCTGGATAGGGGTCAAATCAGAGCTGTAACCAGGCCTGTGCCA
CAGCAACGCCAGATCCAAGCCACGTTTGTGACCTACACCACAGCTCACAGCAACACTGAA
TCTTAATCCACTGATTGAAGCCAGGGATTGAACCTGTGTCTTCATGGATGCTAGGCACAT
TTGTTTCTGCTGAGCCAAGGGGAGCTCCAATAAAAATCTTCCTGTGAATGAATCCATAAA
ACAAGATACCATGCACTGTTCTCCAGAGCAACAATATAAGACCTGGTTCTTTTGCAGAAT
TGAATTTCCAGAAGGACCAATGTTCTCTTCCTTCTCTGACCTTTCTAATCCACAAAGAAC
AAACCAGAAATACAAGGAGGTGGTTGGGTTTTTATTCAGTCTATACTTCTGCATTTTAGA
AAATAAAGAGCTCTCCCCCCTCCCTTTTTTTAGCTCCCAGTTACTTTTGCATCTTGAAAT
TTGAGCTAAAATATATAGAAAGTATTCTTTTTTTTTCTTTTTCTTTTTTTTTTTTTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGACCTCCCTCCCAAAAAAAAAACAAAAAAACAAAACTAAAACCCACAAAACAGTAGAT
AGAGAACATGAGTCTCTTGAGATCGATGTTATTTCAGACCAACCCAGTCCCCTCCCATCT
CTACAGAAAGTCTTTTCTTCTTGGAATACCACATTGGCCTAAAGTAAACTCAGAATTACA
AAGATCTTAAGACCCAAGGCAGTTTTGACCATTACCTTCTGAGACTATAGGAGATAAAGA
CAAGAGAAAAATCGTGTGTGTGTCTGTGTCTGTGTCTGTGTCTTTATCTTTTTAGGGCTG
CACCCGCAGCACCTAGAGCTGGATAGGGGTCAAATCAGAGCTGTAACCAGGCCTGTGCCA
CAGCAACGCCAGATCCAAGCCACGTTTGTGACCTACACCACAGCTCACAGCAACACTGAA
TCTTAATCCACTGATTGAAGCCAGGGATTGAACCTGTGTCTTCATGGATGCTAGGCACAT
TTGTTTCTGCTGAGCCAAGGGGAGCTCCAATAAAAATCTTCCTGTGAATGAATCCATAAA
ACAAGATACCATGCACTGTTCTCCAGAGCAACAATATAAGACCTGGTTCTTTTGCAGAAT
TGAATTTCCAGAAGGACCAATGTTCTCTTCCTTCTCTGACCTTTCTAATCCACAAAGAAC
AAACCAGAAATACAAGGAGGTGGTTGGGTTTTTATTCAGTCTATACTTCTGCATTTTAGA
AAATAAAGAGCTCTCCCCCCTCCCTTTTTTTAGCTCCCAGTTACTTTTGCATCTTGAAAT
TTGAGCTAAAATATATAGAAAGTATTCTTTTTTTTTCTTTTTCTTTTTTTTTTTTTTTTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               681-800, - strand, RNAz p=0.578729

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               681-800, - strand, RNAz p=0.578729

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               54-262, gnl|bosTau2|chr21 (34496741-34496960)
               

               
               54-262, gnl|Hg17|chr15 (41846976-41847670)
               


               
               513-800, gnl|bosTau2|chr21 (34496943-34497234)
               

               
               513-800, gnl|Hg17|chr15 (41847653-41847895)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-262, gnl|bosTau2|chr21 (34496741-34496960)
               

               
               54-262, gnl|Hg17|chr15 (41846976-41847670)
               


               
               513-800, gnl|bosTau2|chr21 (34496943-34497234)
               

               
               513-800, gnl|Hg17|chr15 (41847653-41847895)

	54-262, gnl\|bosTau2\|chr21 (34496741-34496960)
	54-262, gnl\|Hg17\|chr15 (41846976-41847670)

	513-800, gnl\|bosTau2\|chr21 (34496943-34497234)
	513-800, gnl\|Hg17\|chr15 (41847653-41847895)