Non-Coding RNA Search

Ss1.1-Pig4-TMW8029I13.5

Sequence:


               
               CGCTTCTGAGATTCTTCAAGTATCAGCCAACGCAAAGTTGTTTGGTATAAACACAAAGAG
AAGAGACTGTGTTGAACTGTGTGATTATATCACAGGGAGAATTGCTTGATGGAGCACAAG
ACTACATGTCAGGCCTAGATGACATGACAGACTCCGACTCCTGTCTGTCTCGAAAGAAGA
TCAAGAAGACAGAGAGTGGCATGTATGCATGTGACTTATGTGACAAGACATTCCAGAAAA
GCAGTTCCCTTCTGCGACATAAATACGAACACACAGGTATGAGTGACTTTGACTAGCTAG
TTAGAGCTTCCCGGCCTGCTGTACATTTCATAATATTTAATGAGTACACTTGTGCAACAT
AAGATGTAGCATATGCTGATGCCTTCAACAAGGAAGAAATAATGCTTTTGCCTAGCTCAG
TAGGACTTTTTTGTTGCCTGTTTATTGGATCATTCATGTGTTTATGAGAGTGCTTGTCTT
ATATTTTTCGAGTTAGTCTGTACATCAAATTCACAAATCATGTCAAAGTTATATTTCAAT
GGACAGGGTGTTGAAATGGCATGACACAAGCCACCTATAAAAAATGTCTTCACATTCTTA
AGCTGTGAGGAACCTATCTGTAGACAAACTTAACAATAAAATAATTTAGTCAATGCTGTA
TTCTTTTCATCAATGAAACATCAAGTCAGCCATGATTTGGGGGTGATACTGCTTGGTTTT
TATAAATTGGCCATATTTTGAATAAATTAAAAGTGTTAGTACTGTGAAAGAAGAGACTAA
GTAAATAATAGGCCAGATGAGCTACTGAAATTACTAGTAATAGAAGGCTGAAATACAACT
TTCTAAACTTAGTTTATTTCTAAATTCATGTATTCCTAATTGGGAAGGATTATACAGGGT
TGCCAAGATAGCAGCCTATTTCTTCCCTATAAGTACAGAGACAGTGGGTTAATTTTTATA
ATGAAAGGTGAAGTTCCATAAGGTGAAGCAGTATTAGTTCCCACAGTCCAAGGTCTGATC
TGCAAGTCCAGGATGGAGCTCCACCAGGGCTGCCCACCACCCTTCCACCTTTAACCACAA
AATAACTCTGCTTCTCCTATTCCTAACCCATCTCCAACTTTTCGCCACTAGAAATTTGTC
ATGCTGTACTAGCCCTAGCTGGGAAAAGAAAGCATGTAAGATCACAATCAAAATACTGAC
ATGGGTAATTATAGGAAAATTCTCATTTTAAATCAGGATGCCCAGTATGAAATATTTCAG
TATAGAGGAAAAAAATTGAACCTAACATTAATGCTTTGGCGGGAAAACTGATGAAGAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTTCTGAGATTCTTCAAGTATCAGCCAACGCAAAGTTGTTTGGTATAAACACAAAGAG
AAGAGACTGTGTTGAACTGTGTGATTATATCACAGGGAGAATTGCTTGATGGAGCACAAG
ACTACATGTCAGGCCTAGATGACATGACAGACTCCGACTCCTGTCTGTCTCGAAAGAAGA
TCAAGAAGACAGAGAGTGGCATGTATGCATGTGACTTATGTGACAAGACATTCCAGAAAA
GCAGTTCCCTTCTGCGACATAAATACGAACACACAGGTATGAGTGACTTTGACTAGCTAG
TTAGAGCTTCCCGGCCTGCTGTACATTTCATAATATTTAATGAGTACACTTGTGCAACAT
AAGATGTAGCATATGCTGATGCCTTCAACAAGGAAGAAATAATGCTTTTGCCTAGCTCAG
TAGGACTTTTTTGTTGCCTGTTTATTGGATCATTCATGTGTTTATGAGAGTGCTTGTCTT
ATATTTTTCGAGTTAGTCTGTACATCAAATTCACAAATCATGTCAAAGTTATATTTCAAT
GGACAGGGTGTTGAAATGGCATGACACAAGCCACCTATAAAAAATGTCTTCACATTCTTA
AGCTGTGAGGAACCTATCTGTAGACAAACTTAACAATAAAATAATTTAGTCAATGCTGTA
TTCTTTTCATCAATGAAACATCAAGTCAGCCATGATTTGGGGGTGATACTGCTTGGTTTT
TATAAATTGGCCATATTTTGAATAAATTAAAAGTGTTAGTACTGTGAAAGAAGAGACTAA
GTAAATAATAGGCCAGATGAGCTACTGAAATTACTAGTAATAGAAGGCTGAAATACAACT
TTCTAAACTTAGTTTATTTCTAAATTCATGTATTCCTAATTGGGAAGGATTATACAGGGT
TGCCAAGATAGCAGCCTATTTCTTCCCTATAAGTACAGAGACAGTGGGTTAATTTTTATA
ATGAAAGGTGAAGTTCCATAAGGTGAAGCAGTATTAGTTCCCACAGTCCAAGGTCTGATC
TGCAAGTCCAGGATGGAGCTCCACCAGGGCTGCCCACCACCCTTCCACCTTTAACCACAA
AATAACTCTGCTTCTCCTATTCCTAACCCATCTCCAACTTTTCGCCACTAGAAATTTGTC
ATGCTGTACTAGCCCTAGCTGGGAAAAGAAAGCATGTAAGATCACAATCAAAATACTGAC
ATGGGTAATTATAGGAAAATTCTCATTTTAAATCAGGATGCCCAGTATGAAATATTTCAG
TATAGAGGAAAAAAATTGAACCTAACATTAATGCTTTGGCGGGAAAACTGATGAAGAGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               83-282, - strand, RNAz p=0.970464

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-282, - strand, RNAz p=0.970464

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               139-213, + strand, RNAmicro p=0.927322

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               139-213, + strand, RNAmicro p=0.927322

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1317, gnl|bosTau2|chr2 (35508178-35506842)
               

               
               3-1317, gnl|Hg17|chr2 (144987984-144986638)
               

               
               3-1317, gnl|Mm7|chr2 (45002063-45000833)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1317, gnl|bosTau2|chr2 (35508178-35506842)
               

               
               3-1317, gnl|Hg17|chr2 (144987984-144986638)
               

               
               3-1317, gnl|Mm7|chr2 (45002063-45000833)

	3-1317, gnl\|bosTau2\|chr2 (35508178-35506842)
	3-1317, gnl\|Hg17\|chr2 (144987984-144986638)
	3-1317, gnl\|Mm7\|chr2 (45002063-45000833)