Ss1.1-Pig4-TMW8029J07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCCCCGGCTCGCCGCCGCCGCCCGCCCGCCGGGCCCGCAGCCCGGGCTCCCGGCCGCA GGCGAGGCCCAGGCCGCGGCCGACATGAACCACCAGCAACAGCAGCAGCAGCAGCAGAAA GCGGGCGAGCAGCAGCTCAGCGAGCCCGAGGACATGGAGATGGAAGCTGGAGATACAGAT GACCCACCAAGAATTACTCAAAACCCTGTTATCAACGGGAATGTAGCCATGAGTGATGGA CACAACAACACAGAGGAAGATATGGAGGATGACACGAGTTGGCGCTCCGAGGCGACCTTT CAGTTCACTGTCGAGCGCTTCAGCAGACTGAGTGAGTCGGTCCTTAGCCCTCCGTGTTTT GTGCGAAATCTGCCATGGAAGATTATGGTGATGCCACGCTTTTATCCAGACAGACCACAC CAAAAAAGCGTAGGATTCTTTCTCCAGTGCAATGCTGAATCTGATTCCACGTAAGACAGT TTCAATGATGCAATTACACACCCACAAATAGTTATTATACGTTATTGGAAGACAAACCTG ACCTCCCTTTGAATTTTGGATGTCTTTTTGAATTTCCTTGCTGCCTCTACATAGCCATTT GGTTTTAAATTAAATAAATTTCTCTCTTTAAAACCTGCCGGTAGGTATTATAGCCAAACT ACAACAGGTGTATATTTTTCTTGCAAATAAAAAACTAAACCTTGCATAGAATCTACCTGC CCATGGAACATGGAATCAGAGTCTGTTTGGACTAGCTGACTGCTGGATTACCAGTAACGG CCAGAGGGCAAAATTGTATGTAATTGAGAAGAACTGAGGTCTGTCAGGCCTCCTCATTGT ATGCCAGCCAGTTCCTCTTGGTTAAACAGAAAGTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCCCCGGCTCGCCGCCGCCGCCCGCCCGCCGGGCCCGCAGCCCGGGCTCCCGGCCGCA GGCGAGGCCCAGGCCGCGGCCGACATGAACCACCAGCAACAGCAGCAGCAGCAGCAGAAA GCGGGCGAGCAGCAGCTCAGCGAGCCCGAGGACATGGAGATGGAAGCTGGAGATACAGAT GACCCACCAAGAATTACTCAAAACCCTGTTATCAACGGGAATGTAGCCATGAGTGATGGA CACAACAACACAGAGGAAGATATGGAGGATGACACGAGTTGGCGCTCCGAGGCGACCTTT CAGTTCACTGTCGAGCGCTTCAGCAGACTGAGTGAGTCGGTCCTTAGCCCTCCGTGTTTT GTGCGAAATCTGCCATGGAAGATTATGGTGATGCCACGCTTTTATCCAGACAGACCACAC CAAAAAAGCGTAGGATTCTTTCTCCAGTGCAATGCTGAATCTGATTCCACGTAAGACAGT TTCAATGATGCAATTACACACCCACAAATAGTTATTATACGTTATTGGAAGACAAACCTG ACCTCCCTTTGAATTTTGGATGTCTTTTTGAATTTCCTTGCTGCCTCTACATAGCCATTT GGTTTTAAATTAAATAAATTTCTCTCTTTAAAACCTGCCGGTAGGTATTATAGCCAAACT ACAACAGGTGTATATTTTTCTTGCAAATAAAAAACTAAACCTTGCATAGAATCTACCTGC CCATGGAACATGGAATCAGAGTCTGTTTGGACTAGCTGACTGCTGGATTACCAGTAACGG CCAGAGGGCAAAATTGTATGTAATTGAGAAGAACTGAGGTCTGTCAGGCCTCCTCATTGT ATGCCAGCCAGTTCCTCTTGGTTAAACAGAAAGTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 310-429, + strand, RNAz p=0.574556 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 310-429, + strand, RNAz p=0.574556 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 164-269, gnl|bosTau2|chr25 (6517881-6517986) | |
| 164-269, gnl|canFam2|chr6 (36323997-36323852) | |
| 164-269, gnl|canFam2|chr6 (36323884-36323990) | |
| 164-269, gnl|danRer3|chr8 (31448707-31448583) | |
| 164-269, gnl|danRer3|chr8 (31448596-31448701) | |
| 164-269, gnl|dasNov1|scaffold_14159 (36693-36563) | |
| 164-269, gnl|dasNov1|scaffold_301092 (911-818) | |
| 164-269, gnl|echTel1|scaffold_286900 (8437-8307) | |
| 164-269, gnl|echTel1|scaffold_286900 (8325-8430) | |
| 164-269, gnl|fr1|chrUn (209306176-209306304) | |
| 164-269, gnl|fr1|chrUn (209306290-209306185) | |
| 164-269, gnl|galGal2|chr14 (12112552-12112414) | |
| 164-269, gnl|galGal2|chr14 (12112441-12112546) | |
| 164-269, gnl|hg17|chr16 (8931646-8931776) | |
| 164-269, gnl|Hg17|chr16 (8931758-8931653) | |
| 164-269, gnl|hg17|chr5 (107088471-107088577) | |
| 164-269, gnl|loxAfr1|scaffold_10099 (22178-22048) | |
| 164-269, gnl|loxAfr1|scaffold_10099 (22066-22171) | |
| 164-269, gnl|mm7|chr16 (8390159-8390289) | |
| 164-269, gnl|mm7|chr16 (8390272-8390166) | |
| 164-269, gnl|Mm7|chr16 (8390271-8390166) | |
| 164-269, gnl|monDom2|scaffold_17 (36975866-36975732) | |
| 164-269, gnl|oryCun1|scaffold_157855 (4086-3956) | |
| 164-269, gnl|oryCun1|scaffold_157855 (3973-4079) | |
| 164-269, gnl|panTro1|chr18 (9063716-9063846) | |
| 164-269, gnl|panTro1|chr4 (113078633-113078739) | |
| 164-269, gnl|rheMac2|chr20 (9069423-9069553) | |
| 164-269, gnl|rheMac2|chr6 (104044591-104044697) | |
| 164-269, gnl|rn3|chr10 (6936465-6936335) | |
| 164-269, gnl|rn3|chr10 (6936352-6936458) | |
| 164-269, gnl|tetNig1|chrUn_random (40289960-40289832) | |
| 164-269, gnl|tetNig1|chrUn_random (40289849-40289954) | |
| 164-269, gnl|xenTro1|scaffold_253 (1234386-1234515) | |
| 164-269, gnl|xenTro1|scaffold_253 (1234498-1234392) | |
| 271-843, gnl|bosTau2|chr25 (6522811-6523373) | |
| 271-843, gnl|Hg17|chr16 (8924772-8924229) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 164-269, gnl|bosTau2|chr25 (6517881-6517986) | |
| 164-269, gnl|canFam2|chr6 (36323997-36323852) | |
| 164-269, gnl|canFam2|chr6 (36323884-36323990) | |
| 164-269, gnl|danRer3|chr8 (31448707-31448583) | |
| 164-269, gnl|danRer3|chr8 (31448596-31448701) | |
| 164-269, gnl|dasNov1|scaffold_14159 (36693-36563) | |
| 164-269, gnl|dasNov1|scaffold_301092 (911-818) | |
| 164-269, gnl|echTel1|scaffold_286900 (8437-8307) | |
| 164-269, gnl|echTel1|scaffold_286900 (8325-8430) | |
| 164-269, gnl|fr1|chrUn (209306176-209306304) | |
| 164-269, gnl|fr1|chrUn (209306290-209306185) | |
| 164-269, gnl|galGal2|chr14 (12112552-12112414) | |
| 164-269, gnl|galGal2|chr14 (12112441-12112546) | |
| 164-269, gnl|hg17|chr16 (8931646-8931776) | |
| 164-269, gnl|Hg17|chr16 (8931758-8931653) | |
| 164-269, gnl|hg17|chr5 (107088471-107088577) | |
| 164-269, gnl|loxAfr1|scaffold_10099 (22178-22048) | |
| 164-269, gnl|loxAfr1|scaffold_10099 (22066-22171) | |
| 164-269, gnl|mm7|chr16 (8390159-8390289) | |
| 164-269, gnl|mm7|chr16 (8390272-8390166) | |
| 164-269, gnl|Mm7|chr16 (8390271-8390166) | |
| 164-269, gnl|monDom2|scaffold_17 (36975866-36975732) | |
| 164-269, gnl|oryCun1|scaffold_157855 (4086-3956) | |
| 164-269, gnl|oryCun1|scaffold_157855 (3973-4079) | |
| 164-269, gnl|panTro1|chr18 (9063716-9063846) | |
| 164-269, gnl|panTro1|chr4 (113078633-113078739) | |
| 164-269, gnl|rheMac2|chr20 (9069423-9069553) | |
| 164-269, gnl|rheMac2|chr6 (104044591-104044697) | |
| 164-269, gnl|rn3|chr10 (6936465-6936335) | |
| 164-269, gnl|rn3|chr10 (6936352-6936458) | |
| 164-269, gnl|tetNig1|chrUn_random (40289960-40289832) | |
| 164-269, gnl|tetNig1|chrUn_random (40289849-40289954) | |
| 164-269, gnl|xenTro1|scaffold_253 (1234386-1234515) | |
| 164-269, gnl|xenTro1|scaffold_253 (1234498-1234392) | |
| 271-843, gnl|bosTau2|chr25 (6522811-6523373) | |
| 271-843, gnl|Hg17|chr16 (8924772-8924229) |