Non-Coding RNA Search

Ss1.1-Pig4-TMW8029J10.5

Sequence:


               
               GCCTTAACCAGTTTAATGTTTTGTCAGAACAAAGAACAAACATGAAACAGGACAAGGGTA
TATTCTTTCAAGATTCCCAAAGGGACAGATTAGCATGGACACAGCAAATCAGCATGATCT
TGGTGTCTGCGAAGGAAATCTCATCTTCAAAAGCGTGCCAGCAGCCAGCATCGCCAAGGT
CCAGGCCATGTTCAGCTCGGGGCTAGGATTGTGAAGCCCAATGGCGAGAAGCCGGATGCA
CTGGAGACGGGCATCTCCCAGGCTCTCCTGGAACTGGAGATGAACTTGGACCTCAAGGCC
CAGCTGCTCGAGCTGAACCTCATGGCCGCCAAGGAAGTTGAGGTTGGCAGCGGTCAGAAA
GCTGTTATCATCTCTGGTCCTTTTCCTCAACTGAAGTCTTTCCAGAAACTCCAGGTCTGA
GTTGTGTGTGAGTTGGAGAAGTTCATTGCTCAGAGGAGAATTCTGCCCAATCCACCTCAA
AAAATCCATACAAAAAATAAGCAAAAGTGTCCCAGGAGCCACACCCTGACAGCCATGCAC
GATGGCACCCTGGAGGACTTGGCGTTCCCTCGTGAGATGATGGGCAGAGAATCTGGGTGA
AGAGGGACGGCAGCCACCTCATAAAGGACCCTTTGGACAAAGCACAGCAGAACAACGTGG
AGCACATGGTATGAAACAGTTTCTGGAATCTATAAGAAGGTCATGGGCGGGGATGTTAAT
TTTGAATTCCCAGAGTTTCGGCTATAAATAGAAATGACTAAATAAAATATTATTCATAAG
TGATTTATTTTT------------------------------------------------
------------------------------------AGCAACGCCGAGTAGTTTTTGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTAACCAGTTTAATGTTTTGTCAGAACAAAGAACAAACATGAAACAGGACAAGGGTA
TATTCTTTCAAGATTCCCAAAGGGACAGATTAGCATGGACACAGCAAATCAGCATGATCT
TGGTGTCTGCGAAGGAAATCTCATCTTCAAAAGCGTGCCAGCAGCCAGCATCGCCAAGGT
CCAGGCCATGTTCAGCTCGGGGCTAGGATTGTGAAGCCCAATGGCGAGAAGCCGGATGCA
CTGGAGACGGGCATCTCCCAGGCTCTCCTGGAACTGGAGATGAACTTGGACCTCAAGGCC
CAGCTGCTCGAGCTGAACCTCATGGCCGCCAAGGAAGTTGAGGTTGGCAGCGGTCAGAAA
GCTGTTATCATCTCTGGTCCTTTTCCTCAACTGAAGTCTTTCCAGAAACTCCAGGTCTGA
GTTGTGTGTGAGTTGGAGAAGTTCATTGCTCAGAGGAGAATTCTGCCCAATCCACCTCAA
AAAATCCATACAAAAAATAAGCAAAAGTGTCCCAGGAGCCACACCCTGACAGCCATGCAC
GATGGCACCCTGGAGGACTTGGCGTTCCCTCGTGAGATGATGGGCAGAGAATCTGGGTGA
AGAGGGACGGCAGCCACCTCATAAAGGACCCTTTGGACAAAGCACAGCAGAACAACGTGG
AGCACATGGTATGAAACAGTTTCTGGAATCTATAAGAAGGTCATGGGCGGGGATGTTAAT
TTTGAATTCCCAGAGTTTCGGCTATAAATAGAAATGACTAAATAAAATATTATTCATAAG
TGATTTATTTTT------------------------------------------------
------------------------------------AGCAACGCCGAGTAGTTTTTGTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38051892|gb|AAH60557.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38051892|gb|AAH60557.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               175-347, + strand, RNAz p=0.999845

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               175-347, + strand, RNAz p=0.999845

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-151, gnl|bosTau2|chr11 (86314408-86314551)
               


               
               175-779, gnl|bosTau2|chr23 (2996098-2995493)
               

               
               175-779, gnl|Hg17|chr17 (23818962-23819586)
               

               
               175-779, gnl|Mm7|chrX (147668801-147668181)
               


               
               191-440, gnl|bosTau2|chr11 (48700584-48700831)
               

               
               191-440, gnl|Hg17|chr17 (23818970-23819220)
               

               
               191-440, gnl|Mm7|chrX (147668793-147668543)
               


               
               442-771, gnl|bosTau2|chr11 (48700857-48701187)
               

               
               442-771, gnl|Hg17|chr17 (23819246-23819581)
               

               
               442-771, gnl|Mm7|chrX (147668517-147668187)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-151, gnl|bosTau2|chr11 (86314408-86314551)
               


               
               175-779, gnl|bosTau2|chr23 (2996098-2995493)
               

               
               175-779, gnl|Hg17|chr17 (23818962-23819586)
               

               
               175-779, gnl|Mm7|chrX (147668801-147668181)
               


               
               191-440, gnl|bosTau2|chr11 (48700584-48700831)
               

               
               191-440, gnl|Hg17|chr17 (23818970-23819220)
               

               
               191-440, gnl|Mm7|chrX (147668793-147668543)
               


               
               442-771, gnl|bosTau2|chr11 (48700857-48701187)
               

               
               442-771, gnl|Hg17|chr17 (23819246-23819581)
               

               
               442-771, gnl|Mm7|chrX (147668517-147668187)

	1-151, gnl\|bosTau2\|chr11 (86314408-86314551)

	175-779, gnl\|bosTau2\|chr23 (2996098-2995493)
	175-779, gnl\|Hg17\|chr17 (23818962-23819586)
	175-779, gnl\|Mm7\|chrX (147668801-147668181)

	191-440, gnl\|bosTau2\|chr11 (48700584-48700831)
	191-440, gnl\|Hg17\|chr17 (23818970-23819220)
	191-440, gnl\|Mm7\|chrX (147668793-147668543)

	442-771, gnl\|bosTau2\|chr11 (48700857-48701187)
	442-771, gnl\|Hg17\|chr17 (23819246-23819581)
	442-771, gnl\|Mm7\|chrX (147668517-147668187)