Non-Coding RNA Search

Ss1.1-Pig4-TMW8029K06.3

Sequence:


               
               GACAAATTGAAAATTCCTCCCGAAGAAATGAAAGAAATGGAACAAAAGTGTGAGTAATCT
AGAAAATATAGATGTCAAAGACAAAAGGTCCTCTCATAATTGTTACGAACATTGACTTTA
AATAAGGTGTAATGAATGAAACATAAATGCAAGTACTGTTTTTGAAAATTAGTTTGAATG
ATGTACAAGGTTTTAATATAGTTTTATGTTGGAAACAGACATATGGCAGCCTCCATAGTA
AGGCTCCTTTTCTCTTTTGCCAAGATGCTCTATGTATTCATTTTGGAAAGCAGTTTTTCA
AGATGAAAAAACTTGAATCTTTTTTCAGCTGCTCTTTTCCAGTAGTTTTTTTTTCTCGAT
AAGGAGAACACCCCTATTAACCTTGTAAAAATGAAGTATATCCATAAAGATGTTAACAAC
ATAAAGATGTTAAGCTAGTTTTATGGTTTACTATGTACATGGTATATTTGGTACATTCCC
ATGTAAATTGGAGATTTTCATGGAAATTATAAAAATGATATGGGTGATTGCTAACAAGTT
GTAAGCCACTTGTCACCATTCCTCATTTCACTGAGAGCTCTTGTATCAGTTTCATTTTGC
TTAAGAAAATATATGATATGCTGCTGTTTTCAATTGTTAGCTGATAACTTTTACGGGAAA
TTTGACAGCTTACTAGAATTTATATGCAAGGAAACAGTAAAAACTTAAGAGCATGTATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAAATTGAAAATTCCTCCCGAAGAAATGAAAGAAATGGAACAAAAGTGTGAGTAATCT
AGAAAATATAGATGTCAAAGACAAAAGGTCCTCTCATAATTGTTACGAACATTGACTTTA
AATAAGGTGTAATGAATGAAACATAAATGCAAGTACTGTTTTTGAAAATTAGTTTGAATG
ATGTACAAGGTTTTAATATAGTTTTATGTTGGAAACAGACATATGGCAGCCTCCATAGTA
AGGCTCCTTTTCTCTTTTGCCAAGATGCTCTATGTATTCATTTTGGAAAGCAGTTTTTCA
AGATGAAAAAACTTGAATCTTTTTTCAGCTGCTCTTTTCCAGTAGTTTTTTTTTCTCGAT
AAGGAGAACACCCCTATTAACCTTGTAAAAATGAAGTATATCCATAAAGATGTTAACAAC
ATAAAGATGTTAAGCTAGTTTTATGGTTTACTATGTACATGGTATATTTGGTACATTCCC
ATGTAAATTGGAGATTTTCATGGAAATTATAAAAATGATATGGGTGATTGCTAACAAGTT
GTAAGCCACTTGTCACCATTCCTCATTTCACTGAGAGCTCTTGTATCAGTTTCATTTTGC
TTAAGAAAATATATGATATGCTGCTGTTTTCAATTGTTAGCTGATAACTTTTACGGGAAA
TTTGACAGCTTACTAGAATTTATATGCAAGGAAACAGTAAAAACTTAAGAGCATGTATGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               418-537, + strand, RNAz p=0.582732

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               418-537, + strand, RNAz p=0.582732

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-720, gnl|bosTau2|chr22 (11016396-11015650)
               

               
               1-720, gnl|Hg17|chr3 (32561420-32559776)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr22 (11016396-11015650)
               

               
               1-720, gnl|Hg17|chr3 (32561420-32559776)

	1-720, gnl\|bosTau2\|chr22 (11016396-11015650)
	1-720, gnl\|Hg17\|chr3 (32561420-32559776)