Non-Coding RNA Search

Ss1.1-Pig4-TMW8029L04.5

Sequence:


               
               TTCGTCCACCTCAGAGGAGCTCAGCGGGTGAATTCCATTCTCAGCAGTGCCGTCCACTGC
ATGGACCACTGCATTCATCATGGTGGAGCCTTCGACCATCCTCATGGGGGTGTTGGAGAT
TCGCTTTTCTTTGGGAGTGCCCACGGGGGTCTGCTGAGCATTCAGATCCACTTCTGCCTT
CCGGTCCTCCTGGGCAGGGCAAGGGGCGGGGACCACAGGGCCAGGGCTGGGGGCCACCTG
GGTCTCCTTGACTGGGGCCGGCAGGGTGTCCGCGTTCTCCAGCTCCTCGATCTCCTTCTC
CAGCCTGGCGATGGATTCCTCCAGGAGCCTAGCCTTCTGCTCATCCTCCTGCATCTGCTT
CCTCATGTCCTCGTCCCCCTCCGAGGCCGAAGAAGGCGTCCCCTCCAGCAGCCAGCGTTC
CCGCAGCGCTTTAGACTTCAGGTGCTGCAGCTGCCTCCGGTCGTCCTCCAGCTGCCGGCG
CCTGTTCTCCACCTCTGCCTGCCGCCTCCGCTTCTCTGCAATGGCCTGGAGCCTCTCCTG
CTGGGATATGGTCTCTGCCGCCAGGACCTCCATTTCCCCGCCGAGGTCTGTGCGTCCGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGTCCACCTCAGAGGAGCTCAGCGGGTGAATTCCATTCTCAGCAGTGCCGTCCACTGC
ATGGACCACTGCATTCATCATGGTGGAGCCTTCGACCATCCTCATGGGGGTGTTGGAGAT
TCGCTTTTCTTTGGGAGTGCCCACGGGGGTCTGCTGAGCATTCAGATCCACTTCTGCCTT
CCGGTCCTCCTGGGCAGGGCAAGGGGCGGGGACCACAGGGCCAGGGCTGGGGGCCACCTG
GGTCTCCTTGACTGGGGCCGGCAGGGTGTCCGCGTTCTCCAGCTCCTCGATCTCCTTCTC
CAGCCTGGCGATGGATTCCTCCAGGAGCCTAGCCTTCTGCTCATCCTCCTGCATCTGCTT
CCTCATGTCCTCGTCCCCCTCCGAGGCCGAAGAAGGCGTCCCCTCCAGCAGCCAGCGTTC
CCGCAGCGCTTTAGACTTCAGGTGCTGCAGCTGCCTCCGGTCGTCCTCCAGCTGCCGGCG
CCTGTTCTCCACCTCTGCCTGCCGCCTCCGCTTCTCTGCAATGGCCTGGAGCCTCTCCTG
CTGGGATATGGTCTCTGCCGCCAGGACCTCCATTTCCCCGCCGAGGTCTGTGCGTCCGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4186043|emb|CAA76152.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4186043|emb|CAA76152.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               320-437, - strand, RNAz p=0.863563

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-437, - strand, RNAz p=0.863563

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               297-437, gnl|bosTau2|chr7 (10672980-10673119)
               

               
               297-437, gnl|Hg17|chr19 (678700-678562)
               

               
               297-437, gnl|Mm7|chr10 (79587726-79587582)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               297-437, gnl|bosTau2|chr7 (10672980-10673119)
               

               
               297-437, gnl|Hg17|chr19 (678700-678562)
               

               
               297-437, gnl|Mm7|chr10 (79587726-79587582)

	297-437, gnl\|bosTau2\|chr7 (10672980-10673119)
	297-437, gnl\|Hg17\|chr19 (678700-678562)
	297-437, gnl\|Mm7\|chr10 (79587726-79587582)