Non-Coding RNA Search

Ss1.1-Pig4-TMW8029L05.5

Sequence:


               
               TGCTGGAGAGGCAGGGGGAGGAGACGGGGAGCTCTGGGGGAGGGGGCGTGTCTTCTCGGC
CAGGTTGAAATCCCCGGGGTATAGGGTCCCATTCTCGTGCAGGCCTTCCCTGGAGGGGAA
AAAGCTTTGAGATGGAGGGCTTCGGAAGAGTACCTTTTTTGGCAGCTGCGCGTGTTTAAT
TCGCTGGACACTTCCGAAACTTTTGGGGCGAGGAGTAAAGACACCTGCTGGTCTGACACC
CCACCACTCCTCGGGCCGACTTCCTCTCCTCCCTCCGTTCCCAACTGTCCGCGAGGACCA
GTTGGCTGGCTTTCTCGCTTTCCTGTGGCCACTCCTGACGTTTCTAGTGTTCACTGTAGG
GAGATGGACATTTGCAGCTGTGAGAGTAGAGGGTCTTCTTCCACCTCTTTCGGTTGTCAC
GTAAGATGAGGCTCTAGCTGGAAGCTCAGCAGTGCTTCTGCAGGCAACTCAAACCTTCCT
GCCCGCCCCTCACTGTGGGCAGGGTCCGGCAGAAGTGGGGAGAGGGTCCAGAAATGAGGA
CGAACGAGGAAGGATGGCTGAATCAGAAGTGAGGCAGTGTGATCGCAGCTTCTAGGGTGC
ACAGGTCTGGTCCTTGCTCCACTGGAAAGTGCAGCCAGGTTTGTTTCCTTCAGGGCTTTG
TCAGACTCTGAATCCACTTTGGGGAAGAAAATCTGGGAACAGCACTGCCTACTGACTGGG
GACTGGGTGGCTGAAGCAGTCTCTTGGCAGATGCTTAACGGAGATTAGAAGGAAACCTCC
TATGCATTTAGTTGCCTGAAACCAGCCTTTGGTTGGTGGTTTCTCTTCATAATGGCTGTT
TTGTGTGTGAGCCTAGATTGTGTGTGTTGGGGGTTGGGGGTTTGGAGTTATAGTGTGTAA
AGGGTATTGTTAGTTATGCTCATTGGGGCTTTATCTGCATTCGGCTGAAGGGACCAGTGT
TTTACCGAGCAGTCTCTGCTTTTGCCTCTATAAGCAAATGCTTACATGGCCAGAATGAGG
GAGGCAGTGTGTGTGTGTGTGTAGTCCTGAAAGAAATGAATTAACCGGACTGTTTGGAAC
ATTTTTGATGGTAGCTGATACATTACATTAAATGAGTTTGATAGAGTGAGGAAAATGCCA
TCTGGAAAAACCCAAATGAATGCCACAAAACTCACATTGGAGGATTTGGGGCCTGTTCTT
TTTCAGAGTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGGAGAGGCAGGGGGAGGAGACGGGGAGCTCTGGGGGAGGGGGCGTGTCTTCTCGGC
CAGGTTGAAATCCCCGGGGTATAGGGTCCCATTCTCGTGCAGGCCTTCCCTGGAGGGGAA
AAAGCTTTGAGATGGAGGGCTTCGGAAGAGTACCTTTTTTGGCAGCTGCGCGTGTTTAAT
TCGCTGGACACTTCCGAAACTTTTGGGGCGAGGAGTAAAGACACCTGCTGGTCTGACACC
CCACCACTCCTCGGGCCGACTTCCTCTCCTCCCTCCGTTCCCAACTGTCCGCGAGGACCA
GTTGGCTGGCTTTCTCGCTTTCCTGTGGCCACTCCTGACGTTTCTAGTGTTCACTGTAGG
GAGATGGACATTTGCAGCTGTGAGAGTAGAGGGTCTTCTTCCACCTCTTTCGGTTGTCAC
GTAAGATGAGGCTCTAGCTGGAAGCTCAGCAGTGCTTCTGCAGGCAACTCAAACCTTCCT
GCCCGCCCCTCACTGTGGGCAGGGTCCGGCAGAAGTGGGGAGAGGGTCCAGAAATGAGGA
CGAACGAGGAAGGATGGCTGAATCAGAAGTGAGGCAGTGTGATCGCAGCTTCTAGGGTGC
ACAGGTCTGGTCCTTGCTCCACTGGAAAGTGCAGCCAGGTTTGTTTCCTTCAGGGCTTTG
TCAGACTCTGAATCCACTTTGGGGAAGAAAATCTGGGAACAGCACTGCCTACTGACTGGG
GACTGGGTGGCTGAAGCAGTCTCTTGGCAGATGCTTAACGGAGATTAGAAGGAAACCTCC
TATGCATTTAGTTGCCTGAAACCAGCCTTTGGTTGGTGGTTTCTCTTCATAATGGCTGTT
TTGTGTGTGAGCCTAGATTGTGTGTGTTGGGGGTTGGGGGTTTGGAGTTATAGTGTGTAA
AGGGTATTGTTAGTTATGCTCATTGGGGCTTTATCTGCATTCGGCTGAAGGGACCAGTGT
TTTACCGAGCAGTCTCTGCTTTTGCCTCTATAAGCAAATGCTTACATGGCCAGAATGAGG
GAGGCAGTGTGTGTGTGTGTGTAGTCCTGAAAGAAATGAATTAACCGGACTGTTTGGAAC
ATTTTTGATGGTAGCTGATACATTACATTAAATGAGTTTGATAGAGTGAGGAAAATGCCA
TCTGGAAAAACCCAAATGAATGCCACAAAACTCACATTGGAGGATTTGGGGCCTGTTCTT
TTTCAGAGTCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               894-1042, - strand, RNAz p=0.965814

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               894-1042, - strand, RNAz p=0.965814

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-1042, gnl|bosTau2|chr22 (25152563-25153581)
               

               
               16-1042, gnl|Hg17|chr3 (69872136-69873188)
               

               
               16-1042, gnl|Mm7|chr6 (97895942-97897035)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-1042, gnl|bosTau2|chr22 (25152563-25153581)
               

               
               16-1042, gnl|Hg17|chr3 (69872136-69873188)
               

               
               16-1042, gnl|Mm7|chr6 (97895942-97897035)

	16-1042, gnl\|bosTau2\|chr22 (25152563-25153581)
	16-1042, gnl\|Hg17\|chr3 (69872136-69873188)
	16-1042, gnl\|Mm7\|chr6 (97895942-97897035)