Non-Coding RNA Search

Ss1.1-Pig4-TMW8029O01.5

Sequence:


               
               AAAGATTCTTCTCAAAATCCAGGGAATTAAAAGTATATTTAAATAACAGTAAACTAAGTT
TATAAAATTAAGTTTTTCCTGAGAAAAAGGGACTAAGAGAAAATTTGATTGATTCATAGA
CTTGGCTAAGTGGAATTGTAATGTTCTCTTTTTACTGATTATTAAATGAGGCCTAGCCTT
GACATTCCATAACGCAAATAGAGATTTAGGTCCTGCCATAAAATCGAGACGCCTATCCCA
CACTAATGCTGTTTTCATGCCAACTATTACTGTTTGAAATCAGGCAAGACCTTTTGTCTA
TCCCTAGAGTTGTATACCTTGAGGCAGACACATGACAGGCTATGCACTGTAACTTAACTT
CTAAAGGAGGTCTTTCCCGGAAGAAATCTCCACAGGAAAACATCCTGTTTTGCACATAAT
GAGACTCAAAGATAGGAAGGTTGTGTAGTTCCCTTCATGGCTCAGTGGGTTAACTAACCA
GACTAGGAACCATAAGGATGCGGGTTCTATCTCCGGCCTTGCTTAGTGGGTTAAGGATCT
GGCATTGCCAGGAGCTGTGGTATAGGTCACAGACGTGGCTCGGATCCCATATTGCTGTGG
CTGTGGCTGTGGCCCGGCAGCTGTAGCTCCAGTTTGGGCTGGGAACCGCCACATGCCACA
GGTGCGGCCCTAAAAACCGGAAAAAAAAAAAAAAAAAGATAGGAAGGTTAGTTATAACCC
TTTCCCATTTGAAAGTCAAATGTCAGCAAATGATCAGGCATTAATGACTTACCCATTTAA
CTAGGAGCACGTATTATTTAAAGGGGATCTTTCAATTTATTCCCCAGCCCTCTTTTCTAA
CTTTAACTTTTTTTTAATCAAGAAAGTGAATAAAGTCATTCACATCTTGCTATTCCAAAT
AAAACAGCAACATGTAGTGAAAGGAACACTTGGGGAAAGGCTTCGTGGTAAATAGACTTG
GGACAATCTCCAGGGGAGTCTCCCAGCCTTCGCTGATGAACTTTAGGAAGATGCTCACTG
TATCATGAGTTGCTGAGTGAGGAAGAAAGACTGACTCCCTCTTTCCCCACCTCTACCCCC
TCCATCCCTCTCAGGGCAATCAGAGCCAAGTCCTTTTACATCAAAGCAACTACAAAAATA
AACCAAAACTTTGAGCCCTGATCAATTCATCTTGTCTTCACCTTAACTTGAAAAAAGAAT
AAAAAGAAAAGAAAAAAGGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGATTCTTCTCAAAATCCAGGGAATTAAAAGTATATTTAAATAACAGTAAACTAAGTT
TATAAAATTAAGTTTTTCCTGAGAAAAAGGGACTAAGAGAAAATTTGATTGATTCATAGA
CTTGGCTAAGTGGAATTGTAATGTTCTCTTTTTACTGATTATTAAATGAGGCCTAGCCTT
GACATTCCATAACGCAAATAGAGATTTAGGTCCTGCCATAAAATCGAGACGCCTATCCCA
CACTAATGCTGTTTTCATGCCAACTATTACTGTTTGAAATCAGGCAAGACCTTTTGTCTA
TCCCTAGAGTTGTATACCTTGAGGCAGACACATGACAGGCTATGCACTGTAACTTAACTT
CTAAAGGAGGTCTTTCCCGGAAGAAATCTCCACAGGAAAACATCCTGTTTTGCACATAAT
GAGACTCAAAGATAGGAAGGTTGTGTAGTTCCCTTCATGGCTCAGTGGGTTAACTAACCA
GACTAGGAACCATAAGGATGCGGGTTCTATCTCCGGCCTTGCTTAGTGGGTTAAGGATCT
GGCATTGCCAGGAGCTGTGGTATAGGTCACAGACGTGGCTCGGATCCCATATTGCTGTGG
CTGTGGCTGTGGCCCGGCAGCTGTAGCTCCAGTTTGGGCTGGGAACCGCCACATGCCACA
GGTGCGGCCCTAAAAACCGGAAAAAAAAAAAAAAAAAGATAGGAAGGTTAGTTATAACCC
TTTCCCATTTGAAAGTCAAATGTCAGCAAATGATCAGGCATTAATGACTTACCCATTTAA
CTAGGAGCACGTATTATTTAAAGGGGATCTTTCAATTTATTCCCCAGCCCTCTTTTCTAA
CTTTAACTTTTTTTTAATCAAGAAAGTGAATAAAGTCATTCACATCTTGCTATTCCAAAT
AAAACAGCAACATGTAGTGAAAGGAACACTTGGGGAAAGGCTTCGTGGTAAATAGACTTG
GGACAATCTCCAGGGGAGTCTCCCAGCCTTCGCTGATGAACTTTAGGAAGATGCTCACTG
TATCATGAGTTGCTGAGTGAGGAAGAAAGACTGACTCCCTCTTTCCCCACCTCTACCCCC
TCCATCCCTCTCAGGGCAATCAGAGCCAAGTCCTTTTACATCAAAGCAACTACAAAAATA
AACCAAAACTTTGAGCCCTGATCAATTCATCTTGTCTTCACCTTAACTTGAAAAAAGAAT
AAAAAGAAAAGAAAAAAGGAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               339-456, + strand, RNAz p=0.510408

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               339-456, + strand, RNAz p=0.510408

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               39-456, gnl|bosTau2|chr7 (60050241-60049822)
               

               
               39-456, gnl|Hg17|chr5 (96479013-96478606)
               

               
               39-456, gnl|Mm7|chr17 (15607614-15608017)
               


               
               695-1224, gnl|bosTau2|chr7 (60049851-60049336)
               

               
               695-1224, gnl|Hg17|chr5 (96478628-96478133)
               

               
               695-1224, gnl|Mm7|chr17 (15607988-15609512)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-456, gnl|bosTau2|chr7 (60050241-60049822)
               

               
               39-456, gnl|Hg17|chr5 (96479013-96478606)
               

               
               39-456, gnl|Mm7|chr17 (15607614-15608017)
               


               
               695-1224, gnl|bosTau2|chr7 (60049851-60049336)
               

               
               695-1224, gnl|Hg17|chr5 (96478628-96478133)
               

               
               695-1224, gnl|Mm7|chr17 (15607988-15609512)

	39-456, gnl\|bosTau2\|chr7 (60050241-60049822)
	39-456, gnl\|Hg17\|chr5 (96479013-96478606)
	39-456, gnl\|Mm7\|chr17 (15607614-15608017)

	695-1224, gnl\|bosTau2\|chr7 (60049851-60049336)
	695-1224, gnl\|Hg17\|chr5 (96478628-96478133)
	695-1224, gnl\|Mm7\|chr17 (15607988-15609512)