Non-Coding RNA Search

Ss1.1-Pig4-TMW8030C23.5

Sequence:


               
               AGTCTTTCCCGACCATGGCACGTATTACTGGACCACCAGAGAGAGACGATCCATACCCTG
TTCTCTTTAGGTATCTTCATAGTCATCACTTCTTGGAGCTGGTTACCTTGCTTCTGTCAA
TTCCAGTAACAAGTGCTCACCCTGGTGTGCTGCAAGCCACAAAAGATGTTTTGAAGTTTC
TTGCACAGTCTCAAAAGGGTCTTCTTTTTTTTATGTCAGAATATGAAGCAACAAATTTGT
TGATCCGAGCTCTCTGTCACCTTTATGATCAAGATGAAGAGGAAGGTCTCCAATCTGATG
GTGTTATTGATGATGCATTTGCTTTGTGGCTACAGGACTCAACACAGACATTGCAGTGTA
TTACAGAACTGTTCAGCCATTTTCAGCGTTGCACAGCCAGTGAAGAAACTGACCATTCAG
ATCTCTTGGGAACTCTTCACAATCTTTACTTGATTACTTTTAATCCTGTGGGAAGATCAG
CTGTCGGTCATGTTTTCAGTCTTGAGAAAAACCTGCAAAGTCTTATAACTCTAATGGAGT
ACTATTCCAAAGAAGCCTTAGGGTAATTTTATCCTTAACTCCTTAAATTTTCAATTTTAT
TGGAAAACTACATCACGAATGGGCTAGTGTCTTGAAAGAATGTGTTGTTTTGAAAATAAA
AACTATAATTTTTTTACAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCTTTCCCGACCATGGCACGTATTACTGGACCACCAGAGAGAGACGATCCATACCCTG
TTCTCTTTAGGTATCTTCATAGTCATCACTTCTTGGAGCTGGTTACCTTGCTTCTGTCAA
TTCCAGTAACAAGTGCTCACCCTGGTGTGCTGCAAGCCACAAAAGATGTTTTGAAGTTTC
TTGCACAGTCTCAAAAGGGTCTTCTTTTTTTTATGTCAGAATATGAAGCAACAAATTTGT
TGATCCGAGCTCTCTGTCACCTTTATGATCAAGATGAAGAGGAAGGTCTCCAATCTGATG
GTGTTATTGATGATGCATTTGCTTTGTGGCTACAGGACTCAACACAGACATTGCAGTGTA
TTACAGAACTGTTCAGCCATTTTCAGCGTTGCACAGCCAGTGAAGAAACTGACCATTCAG
ATCTCTTGGGAACTCTTCACAATCTTTACTTGATTACTTTTAATCCTGTGGGAAGATCAG
CTGTCGGTCATGTTTTCAGTCTTGAGAAAAACCTGCAAAGTCTTATAACTCTAATGGAGT
ACTATTCCAAAGAAGCCTTAGGGTAATTTTATCCTTAACTCCTTAAATTTTCAATTTTAT
TGGAAAACTACATCACGAATGGGCTAGTGTCTTGAAAGAATGTGTTGTTTTGAAAATAAA
AACTATAATTTTTTTACAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61818911|ref|XP_595372.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61818911|ref|XP_595372.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               223-382, + strand, RNAz p=0.80732

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               223-382, + strand, RNAz p=0.80732

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AL832487, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AL832487, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               64-678, gnl|bosTau2|chr19 (35116433-35117046)
               

               
               64-678, gnl|Hg17|chr8 (95600887-95600274)
               

               
               64-678, gnl|Mm7|chr4 (11446066-11446710)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-678, gnl|bosTau2|chr19 (35116433-35117046)
               

               
               64-678, gnl|Hg17|chr8 (95600887-95600274)
               

               
               64-678, gnl|Mm7|chr4 (11446066-11446710)

	64-678, gnl\|bosTau2\|chr19 (35116433-35117046)
	64-678, gnl\|Hg17\|chr8 (95600887-95600274)
	64-678, gnl\|Mm7\|chr4 (11446066-11446710)