Non-Coding RNA Search

Ss1.1-Pig4-TMW8030L09.5

Sequence:


               
               GAACTGGATACAAAACTCTGGAGAGAGGGTGCTGCCAGCTGATGCTGAAGGAAGGGGTGT
GATGAAGCCAGTTACATAAATGTTGGGGAAATGGTAAACTGGAGCTACTGGAACCGACTG
TGACTCTCAGGGTGAAGGCCGGTTTGTAGAATAATACCGAAGGGAGCCCCAGCACCCAGG
GAGGAGCACAGCCCTCTCCCCTCCCCCGGCCTCTGGTCTCTGCTCTCTTGGCCCAGCCTG
ACGGGGAGCAGCTGGCAGAGGAGGTGAATTGTCCCAACCACCAAGCAGAGAGCAGAAGGG
TGAGTGGGAAACTGAGCCATCATGGCTATTAAGCAGCACCCTGAACTCTGGAGTTGTTTA
GTTTTAGAATTAGGGTTTTGTTTTGGTTCGGTTTTTGTTAGTTTGGGAATTGTTAGAATG
ATTTGATTTTAACGTTTCACCTGACGAGAGATCTGGCTGAACTTTGGTCCCCTGATTTGT
TCCTGGATGGAATGTGTCAGCAAGCACCTGGGGAGTGACTCCCCTGAGACTCAGGAACAT
CACTGTAGAGTTCAGGAAAACCAAAATGGTGTGTCCACAAAGAAGCCCTTTGACTGAGTG
GCCAAAAAAGGACAAAGACTAAGGGACAGATGGTCAGGAAGGGGCTCCTTGGAACAGTTG
TCCAACAGAGTGTTTGAAATTTTTCAGAAAGTTAAACTATGTTGTGGGGCCACCCTCTCA
TGCCCCCTTTCCAACAACAAAGTATCTTTCTTGGTAAAGCGTGTTTCAAATTAGTAGGAT
ACAATATTGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTGGATACAAAACTCTGGAGAGAGGGTGCTGCCAGCTGATGCTGAAGGAAGGGGTGT
GATGAAGCCAGTTACATAAATGTTGGGGAAATGGTAAACTGGAGCTACTGGAACCGACTG
TGACTCTCAGGGTGAAGGCCGGTTTGTAGAATAATACCGAAGGGAGCCCCAGCACCCAGG
GAGGAGCACAGCCCTCTCCCCTCCCCCGGCCTCTGGTCTCTGCTCTCTTGGCCCAGCCTG
ACGGGGAGCAGCTGGCAGAGGAGGTGAATTGTCCCAACCACCAAGCAGAGAGCAGAAGGG
TGAGTGGGAAACTGAGCCATCATGGCTATTAAGCAGCACCCTGAACTCTGGAGTTGTTTA
GTTTTAGAATTAGGGTTTTGTTTTGGTTCGGTTTTTGTTAGTTTGGGAATTGTTAGAATG
ATTTGATTTTAACGTTTCACCTGACGAGAGATCTGGCTGAACTTTGGTCCCCTGATTTGT
TCCTGGATGGAATGTGTCAGCAAGCACCTGGGGAGTGACTCCCCTGAGACTCAGGAACAT
CACTGTAGAGTTCAGGAAAACCAAAATGGTGTGTCCACAAAGAAGCCCTTTGACTGAGTG
GCCAAAAAAGGACAAAGACTAAGGGACAGATGGTCAGGAAGGGGCTCCTTGGAACAGTTG
TCCAACAGAGTGTTTGAAATTTTTCAGAAAGTTAAACTATGTTGTGGGGCCACCCTCTCA
TGCCCCCTTTCCAACAACAAAGTATCTTTCTTGGTAAAGCGTGTTTCAAATTAGTAGGAT
ACAATATTGATT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               196-309, - strand, RNAz p=0.513603
               

               
               517-636, - strand, RNAz p=0.939149

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-309, - strand, RNAz p=0.513603
               

               
               517-636, - strand, RNAz p=0.939149

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-792, gnl|bosTau2|chr1 (49561542-49562329)
               

               
               1-792, gnl|canFam2|chr34 (19147103-19147771)
               

               
               1-792, gnl|canFam2|chr34 (19148371-19147430)
               

               
               1-792, gnl|hg17|chr3 (184376498-184377171)
               

               
               1-792, gnl|hg17|chr3 (188028663-188029544)
               

               
               1-792, gnl|Hg17|chr3 (188029028-188029747)
               

               
               1-792, gnl|loxAfr1|scaffold_28680 (16937-16285)
               

               
               1-792, gnl|loxAfr1|scaffold_28680 (15676-16622)
               

               
               1-792, gnl|oryCun1|scaffold_172870 (39061-38443)
               

               
               1-792, gnl|oryCun1|scaffold_172870 (37964-38752)
               

               
               1-792, gnl|panTro1|chr2 (188322375-188323054)
               

               
               1-792, gnl|panTro1|chr2 (192119509-192120405)
               

               
               1-792, gnl|rheMac2|chr2 (103505419-103504748)
               

               
               1-792, gnl|rheMac2|chr2 (179180329-179181257)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-792, gnl|bosTau2|chr1 (49561542-49562329)
               

               
               1-792, gnl|canFam2|chr34 (19147103-19147771)
               

               
               1-792, gnl|canFam2|chr34 (19148371-19147430)
               

               
               1-792, gnl|hg17|chr3 (184376498-184377171)
               

               
               1-792, gnl|hg17|chr3 (188028663-188029544)
               

               
               1-792, gnl|Hg17|chr3 (188029028-188029747)
               

               
               1-792, gnl|loxAfr1|scaffold_28680 (16937-16285)
               

               
               1-792, gnl|loxAfr1|scaffold_28680 (15676-16622)
               

               
               1-792, gnl|oryCun1|scaffold_172870 (39061-38443)
               

               
               1-792, gnl|oryCun1|scaffold_172870 (37964-38752)
               

               
               1-792, gnl|panTro1|chr2 (188322375-188323054)
               

               
               1-792, gnl|panTro1|chr2 (192119509-192120405)
               

               
               1-792, gnl|rheMac2|chr2 (103505419-103504748)
               

               
               1-792, gnl|rheMac2|chr2 (179180329-179181257)

	196-309, - strand, RNAz p=0.513603
	517-636, - strand, RNAz p=0.939149

	1-792, gnl\|bosTau2\|chr1 (49561542-49562329)
	1-792, gnl\|canFam2\|chr34 (19147103-19147771)
	1-792, gnl\|canFam2\|chr34 (19148371-19147430)
	1-792, gnl\|hg17\|chr3 (184376498-184377171)
	1-792, gnl\|hg17\|chr3 (188028663-188029544)
	1-792, gnl\|Hg17\|chr3 (188029028-188029747)
	1-792, gnl\|loxAfr1\|scaffold_28680 (16937-16285)
	1-792, gnl\|loxAfr1\|scaffold_28680 (15676-16622)
	1-792, gnl\|oryCun1\|scaffold_172870 (39061-38443)
	1-792, gnl\|oryCun1\|scaffold_172870 (37964-38752)
	1-792, gnl\|panTro1\|chr2 (188322375-188323054)
	1-792, gnl\|panTro1\|chr2 (192119509-192120405)
	1-792, gnl\|rheMac2\|chr2 (103505419-103504748)
	1-792, gnl\|rheMac2\|chr2 (179180329-179181257)