Non-Coding RNA Search

Ss1.1-Pig4-TMW8030M21.5

Sequence:


               
               AAGGGGCGGCGGCGGCGAGAAAAGGAGCTTGCCGGGGGGCGAGCAGAACGGGACGGGGCC
GGAGCGGAGGTGGCGGAGGATTCGCTCCTGGAGCCGCTGCGGCCAGGTATATGAGTGACC
TAAAGCTGCAAATTAAAACGGAGAGAGAGCAGTGCCAACTGCAAGCAGGGCAAGGATGCC
AATTCCTCCTCCCCCTCCACCACCCCCCGGTCCTCCTCCACCTCCCACTTTTAATCAGGC
AAACACTGAGCTGCCCAAGCTGAGTAGAGATGAGCAGCGGGGTCGAGGTGCTCTCTTACA
GGACATCTGCAAAGGGACCAAACTGAAGAAGGTGACCAACATTAATGATCGGAGTGCTCC
CATCCTTGAGAAACCCAAAGGAAGCAGTGGTGGTTATGGCCCTGGAGCAGCTGCCCTGCA
GCCCAAGGGAGGTCTCTTCCAAGGAGGAGTGCCCAAGCTCCGCCCTGTGGGAGCCAAGGA
CGGTTCAGAGAACCTAGCTGGTAAGCCAGCCCTCCAAGTCCCCAGTTCTCGAGCTGCTGC
CCCAAGGCCTCCGGTGTCTACAGCCAGCGGGCGCCCTCAAGATGACACAGACAGCAACCG
AGCCTCACTCCCAGAACTGCCCCGGACGCAGAGACCCTCGCTACCGGACCTCTCTCGGCC
TCACGCCACCAGCAGTACGGGCATGAAGCACAGCTCCTCCGCCCCTCCTCCGCCTCCCCC
GGGGGCGGCGTGCCAACGCGCCCCCCACACCTCTGGCTATGCACAGCAACAAAGCCCCCG
CCTACAACCGAGAGAAACCCCTGCCGCCCACACCTGGACAGAGGCTTCACCCGGGTCGAG
AGGGACCTTCTGCCCCGCCCCCGGTCAAGCCGCCTCCTTCCCCTGTGAATATCAGAACGG
GACCAAGTGGCCAGTCTCTGGCTCCTCCTCCGCCGCCTTACCGCCAGCCTCCTGGGGTCC
CCAATGGACCCTCCAGTCCCACTAATGAGTCCGCCCCTGAGCTGCCACAGAGACACAATT
CTTTGCATAGGAAGACACCAGGGCCTGTCAGAGGCCTAGCGCCTCCTCCACCCACCTCAG
CCTCCCCGTCTTTACAGAGTAACAGGCCACCTCCGCCCGCTCGAGACCCGCCCAGTCGGG
GAGCAGGTAAGTGCCTGGAAGCGCCTCTTCCCCCCCCCTCACCCGCCCCCGTCCTGCTGA
GAGCGAGTGTATCCTTTCCCCCAGAGCTCTCCAGTGATGGAACCTACGTGTTCAGCAGGT
TCATTGAGTGCCTTTTTATGTGTTAGACTCTCTTGTTAGGGAAACCGGCAATCATTAGAA
AAGACCAAAAAATCCTATTCTGCTGGACATTCAAGCAAATAAATTAGTAAAAATACAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGGCGGCGGCGGCGAGAAAAGGAGCTTGCCGGGGGGCGAGCAGAACGGGACGGGGCC
GGAGCGGAGGTGGCGGAGGATTCGCTCCTGGAGCCGCTGCGGCCAGGTATATGAGTGACC
TAAAGCTGCAAATTAAAACGGAGAGAGAGCAGTGCCAACTGCAAGCAGGGCAAGGATGCC
AATTCCTCCTCCCCCTCCACCACCCCCCGGTCCTCCTCCACCTCCCACTTTTAATCAGGC
AAACACTGAGCTGCCCAAGCTGAGTAGAGATGAGCAGCGGGGTCGAGGTGCTCTCTTACA
GGACATCTGCAAAGGGACCAAACTGAAGAAGGTGACCAACATTAATGATCGGAGTGCTCC
CATCCTTGAGAAACCCAAAGGAAGCAGTGGTGGTTATGGCCCTGGAGCAGCTGCCCTGCA
GCCCAAGGGAGGTCTCTTCCAAGGAGGAGTGCCCAAGCTCCGCCCTGTGGGAGCCAAGGA
CGGTTCAGAGAACCTAGCTGGTAAGCCAGCCCTCCAAGTCCCCAGTTCTCGAGCTGCTGC
CCCAAGGCCTCCGGTGTCTACAGCCAGCGGGCGCCCTCAAGATGACACAGACAGCAACCG
AGCCTCACTCCCAGAACTGCCCCGGACGCAGAGACCCTCGCTACCGGACCTCTCTCGGCC
TCACGCCACCAGCAGTACGGGCATGAAGCACAGCTCCTCCGCCCCTCCTCCGCCTCCCCC
GGGGGCGGCGTGCCAACGCGCCCCCCACACCTCTGGCTATGCACAGCAACAAAGCCCCCG
CCTACAACCGAGAGAAACCCCTGCCGCCCACACCTGGACAGAGGCTTCACCCGGGTCGAG
AGGGACCTTCTGCCCCGCCCCCGGTCAAGCCGCCTCCTTCCCCTGTGAATATCAGAACGG
GACCAAGTGGCCAGTCTCTGGCTCCTCCTCCGCCGCCTTACCGCCAGCCTCCTGGGGTCC
CCAATGGACCCTCCAGTCCCACTAATGAGTCCGCCCCTGAGCTGCCACAGAGACACAATT
CTTTGCATAGGAAGACACCAGGGCCTGTCAGAGGCCTAGCGCCTCCTCCACCCACCTCAG
CCTCCCCGTCTTTACAGAGTAACAGGCCACCTCCGCCCGCTCGAGACCCGCCCAGTCGGG
GAGCAGGTAAGTGCCTGGAAGCGCCTCTTCCCCCCCCCTCACCCGCCCCCGTCCTGCTGA
GAGCGAGTGTATCCTTTCCCCCAGAGCTCTCCAGTGATGGAACCTACGTGTTCAGCAGGT
TCATTGAGTGCCTTTTTATGTGTTAGACTCTCTTGTTAGGGAAACCGGCAATCATTAGAA
AAGACCAAAAAATCCTATTCTGCTGGACATTCAAGCAAATAAATTAGTAAAAATACAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               WIRE_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               WIRE_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               104-222, - strand, RNAz p=0.545756
               

               
               606-725, - strand, RNAz p=0.61031
               

               
               1046-1165, - strand, RNAz p=0.747831

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               104-222, - strand, RNAz p=0.545756
               

               
               606-725, - strand, RNAz p=0.61031
               

               
               1046-1165, - strand, RNAz p=0.747831

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               104-239, gnl|bosTau2|chr19 (34390008-34389873)
               

               
               104-239, gnl|Hg17|chr17 (35666166-35666301)
               

               
               104-239, gnl|Mm7|chr11 (98994010-98994144)
               


               
               487-1373, gnl|bosTau2|chr19 (34385039-34384154)
               

               
               487-1373, gnl|Hg17|chr17 (35674266-35675106)
               

               
               487-1373, gnl|Mm7|chr11 (99001100-99001913)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-239, gnl|bosTau2|chr19 (34390008-34389873)
               

               
               104-239, gnl|Hg17|chr17 (35666166-35666301)
               

               
               104-239, gnl|Mm7|chr11 (98994010-98994144)
               


               
               487-1373, gnl|bosTau2|chr19 (34385039-34384154)
               

               
               487-1373, gnl|Hg17|chr17 (35674266-35675106)
               

               
               487-1373, gnl|Mm7|chr11 (99001100-99001913)

	104-222, - strand, RNAz p=0.545756
	606-725, - strand, RNAz p=0.61031
	1046-1165, - strand, RNAz p=0.747831

	104-239, gnl\|bosTau2\|chr19 (34390008-34389873)
	104-239, gnl\|Hg17\|chr17 (35666166-35666301)
	104-239, gnl\|Mm7\|chr11 (98994010-98994144)

	487-1373, gnl\|bosTau2\|chr19 (34385039-34384154)
	487-1373, gnl\|Hg17\|chr17 (35674266-35675106)
	487-1373, gnl\|Mm7\|chr11 (99001100-99001913)