Non-Coding RNA Search

Ss1.1-Pig4-TMW8030O07.3

Sequence:


               
               GGCCCATCAGACTTCCAAGTGGAGACAGCAAAGAGGCAGTTGGATGACTCGAGTCAAAGT
CAGAACATGGTGTGCAGAAAAGAGTAGGCTCTTTGGCATCATGGGTCCCTTGTTGAGGTG
TGGCGGGTGCCCCACACCCACAGACTCCAGCCATATGAGTCTTCATTTCCCCCTGTTCCC
AGAGTGAGTGACTCTTTTCCTGGCCCCAAGGAGCAGCTGAAGAGGATGCAGTGACCAGTG
GAAGGACACGCAGCATGTCCTGTATTGTGAGGTCAGCTCTTCCACACTCTCCTCATTTGA
TTCTAGCTCCAGCGGACCCTGGGTCCTCACAGCAGGCAAGCAGTCACATTCGAATGAACG
CTGATTGTTCAAAGTTAACACGGCCCCCTTTGCAGGGGGATGTTGTCTGATGGGAGTTTT
CTCTCCGTGAAGATCCCGGCTGAGGTTTCAGGGAAGGAGGAAAGAAGTGAGACGAGAGGC
ACTGGGGGAGGGGAGACGGTGAGCAGCTATGAGCCCAGCGGCACCTCTGACAACTCCCAT
CCCCTCCCCCGCCTGAGCTGGGGCTGCCGAGACGAGCGGGGACACGGCTTTTGTTTTCAT
TTCCATTTAATTTGCCCAAATGAAAACTGCAATTACAGAGCAATTATACGTCCCCATGTG
CTTCAGGGATGCTGTCCCTGGCACATTTCCTATCCCTATTTGGAGAATTCACCCATAAAA
GCATCAGATTCGTCTGCATTATATGTGGAAATCTGCAGTTTCATCCTTTGTGCTAGGGAT
AAAAATTCACCCTGGGGTATCAAGTTTAATAAGGCTTAATTAGACCAATTTGCAGTAAGC
TGAGGTTTCCACTCCGCATTTTGACAAGCAGCTCGAGCTGGTTCACTAGATTTTTATGTT
TGGGAATTTCTGTATCTCAAACAAAAGGTCAGAAGGAACATAAAATTCTAAAAGACTCCT
TTAGGCATCCTGAATTGCTGTTGTCATTGGTATGTGTACATGTGTTTGTTGTGTCACGTC
TTTGGAATGTTCTCATTGGTTATGAAAGTGTGATCTTGGGTAGCTGAGTAGTCTCTCCAT
CAGGGGGATTCAACAAAGTTGATTTTACTGAGTTGCACTTTGATGCCCTATCTCTGGAGT
TTCATCCAGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCATCAGACTTCCAAGTGGAGACAGCAAAGAGGCAGTTGGATGACTCGAGTCAAAGT
CAGAACATGGTGTGCAGAAAAGAGTAGGCTCTTTGGCATCATGGGTCCCTTGTTGAGGTG
TGGCGGGTGCCCCACACCCACAGACTCCAGCCATATGAGTCTTCATTTCCCCCTGTTCCC
AGAGTGAGTGACTCTTTTCCTGGCCCCAAGGAGCAGCTGAAGAGGATGCAGTGACCAGTG
GAAGGACACGCAGCATGTCCTGTATTGTGAGGTCAGCTCTTCCACACTCTCCTCATTTGA
TTCTAGCTCCAGCGGACCCTGGGTCCTCACAGCAGGCAAGCAGTCACATTCGAATGAACG
CTGATTGTTCAAAGTTAACACGGCCCCCTTTGCAGGGGGATGTTGTCTGATGGGAGTTTT
CTCTCCGTGAAGATCCCGGCTGAGGTTTCAGGGAAGGAGGAAAGAAGTGAGACGAGAGGC
ACTGGGGGAGGGGAGACGGTGAGCAGCTATGAGCCCAGCGGCACCTCTGACAACTCCCAT
CCCCTCCCCCGCCTGAGCTGGGGCTGCCGAGACGAGCGGGGACACGGCTTTTGTTTTCAT
TTCCATTTAATTTGCCCAAATGAAAACTGCAATTACAGAGCAATTATACGTCCCCATGTG
CTTCAGGGATGCTGTCCCTGGCACATTTCCTATCCCTATTTGGAGAATTCACCCATAAAA
GCATCAGATTCGTCTGCATTATATGTGGAAATCTGCAGTTTCATCCTTTGTGCTAGGGAT
AAAAATTCACCCTGGGGTATCAAGTTTAATAAGGCTTAATTAGACCAATTTGCAGTAAGC
TGAGGTTTCCACTCCGCATTTTGACAAGCAGCTCGAGCTGGTTCACTAGATTTTTATGTT
TGGGAATTTCTGTATCTCAAACAAAAGGTCAGAAGGAACATAAAATTCTAAAAGACTCCT
TTAGGCATCCTGAATTGCTGTTGTCATTGGTATGTGTACATGTGTTTGTTGTGTCACGTC
TTTGGAATGTTCTCATTGGTTATGAAAGTGTGATCTTGGGTAGCTGAGTAGTCTCTCCAT
CAGGGGGATTCAACAAAGTTGATTTTACTGAGTTGCACTTTGATGCCCTATCTCTGGAGT
TTCATCCAGGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               470-732, - strand, RNAz p=0.992362

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               470-732, - strand, RNAz p=0.992362

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-1110, gnl|bosTau2|chr4 (35537577-35536469)
               

               
               4-1110, gnl|Hg17|chr7 (33976550-33975402)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1110, gnl|bosTau2|chr4 (35537577-35536469)
               

               
               4-1110, gnl|Hg17|chr7 (33976550-33975402)

	4-1110, gnl\|bosTau2\|chr4 (35537577-35536469)
	4-1110, gnl\|Hg17\|chr7 (33976550-33975402)