Non-Coding RNA Search

Ss1.1-Pig4-TMW8031A20.3

Sequence:


               
               GAAATATTCACGGCCAATGCTTCATTTTCATTGATTGATTTCTTTTTAATATCAACAGAA
GTTAATGGAGGCGAGGCGAGCAGTGATTAAACGTCTGCCCCAGCCCTTCGCCTCTGGCGA
GCGCACCGCGGTTCTCCCACCTGGTCCCTGGCGCCCGGCGGCTGGGTGGGGAGCACCCGC
AGAGCTAACGTCAAGGGCTGGCCGGGAGGGTGGTGGTGGAACGAACCGGTCACCCCTCCA
GGAACCATGGGGGGCAAGGGGGTGGGAATCAGCTTTTCGGGCCAAACTTAGGCTATCCGG
CTCAACCGTGTGGCCACTTCTGCGGCTCCCTTGAATTTCTCTGGAACAGGAGGGGCTCGG
CGCTCTGTGCTCGCGGCTCGCCTCCCTCCGCCTCCCTTCCTTTGGATTTCAGACGGAGGA
GAGCCCCCTGGCGCTAGACGTTCCCGGTCAGCGCCTGGCCACGAAACTCCCTTTTGCCGG
ACTTCATCGTGGTCCGCGAGGGACTGGGTTTGGCTCAGGAGAACATTCAGGCCCTCTGAC
AATAGGTTTCTTCAGATAGTGACAACTCCCAGCCCTGACTTTCCCCCACCTCCGGGACAC
ACATCGCTTGGGGCCAACAGAACCTACACCCTGTAACCAACAACAACCCACCCTTCGTCC
CTTGTCTGGAGAGCTTTGATCTGTGCCTGGGTTTTAACACCATTGCCATGGACACTGGCA
GACGCAGTCAATACTACCTTCCGTTCTGGACTGGATGATCAGATAAGAGCTGTAAATTGG
CTGTGGGAGACAGATCTGGGTTCAGACCTGAAAAAGAAGCAAAGATGGTCTAGGGGTCTG
ATCAGAGTTTGAAGAGGGTGTTCTTTTTTAGTCTGCCTCTCCCAGATTGTGGGATGGAGG
TGGGCAGGCATAACATTTGCAAAATAGAACAATAAACTTCTGGGTTCTGCACCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATATTCACGGCCAATGCTTCATTTTCATTGATTGATTTCTTTTTAATATCAACAGAA
GTTAATGGAGGCGAGGCGAGCAGTGATTAAACGTCTGCCCCAGCCCTTCGCCTCTGGCGA
GCGCACCGCGGTTCTCCCACCTGGTCCCTGGCGCCCGGCGGCTGGGTGGGGAGCACCCGC
AGAGCTAACGTCAAGGGCTGGCCGGGAGGGTGGTGGTGGAACGAACCGGTCACCCCTCCA
GGAACCATGGGGGGCAAGGGGGTGGGAATCAGCTTTTCGGGCCAAACTTAGGCTATCCGG
CTCAACCGTGTGGCCACTTCTGCGGCTCCCTTGAATTTCTCTGGAACAGGAGGGGCTCGG
CGCTCTGTGCTCGCGGCTCGCCTCCCTCCGCCTCCCTTCCTTTGGATTTCAGACGGAGGA
GAGCCCCCTGGCGCTAGACGTTCCCGGTCAGCGCCTGGCCACGAAACTCCCTTTTGCCGG
ACTTCATCGTGGTCCGCGAGGGACTGGGTTTGGCTCAGGAGAACATTCAGGCCCTCTGAC
AATAGGTTTCTTCAGATAGTGACAACTCCCAGCCCTGACTTTCCCCCACCTCCGGGACAC
ACATCGCTTGGGGCCAACAGAACCTACACCCTGTAACCAACAACAACCCACCCTTCGTCC
CTTGTCTGGAGAGCTTTGATCTGTGCCTGGGTTTTAACACCATTGCCATGGACACTGGCA
GACGCAGTCAATACTACCTTCCGTTCTGGACTGGATGATCAGATAAGAGCTGTAAATTGG
CTGTGGGAGACAGATCTGGGTTCAGACCTGAAAAAGAAGCAAAGATGGTCTAGGGGTCTG
ATCAGAGTTTGAAGAGGGTGTTCTTTTTTAGTCTGCCTCTCCCAGATTGTGGGATGGAGG
TGGGCAGGCATAACATTTGCAAAATAGAACAATAAACTTCTGGGTTCTGCACCCCCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.572614

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.572614

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-192, gnl|bosTau2|chr2 (54614182-54613988)
               

               
               1-192, gnl|canFam2|chr37 (17296736-17297023)
               

               
               1-192, gnl|dasNov1|scaffold_133716 (2625-2889)
               

               
               1-192, gnl|echTel1|scaffold_317913 (85459-85183)
               

               
               1-192, gnl|hg17|chr2 (206376564-206376842)
               

               
               1-192, gnl|Hg17|chr2 (206376642-206376801)
               

               
               1-192, gnl|loxAfr1|scaffold_2750 (37062-37339)
               

               
               1-192, gnl|mm7|chr1 (62947930-62948206)
               

               
               1-192, gnl|Mm7|chr1 (62948009-62948184)
               

               
               1-192, gnl|monDom2|scaffold_39 (17859314-17859048)
               

               
               1-192, gnl|oryCun1|scaffold_206494 (298211-297933)
               

               
               1-192, gnl|panTro1|chr13 (96397441-96397734)
               

               
               1-192, gnl|rheMac2|chr12 (69568954-69569246)
               

               
               1-192, gnl|rn3|chr9 (61498840-61499147)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-192, gnl|bosTau2|chr2 (54614182-54613988)
               

               
               1-192, gnl|canFam2|chr37 (17296736-17297023)
               

               
               1-192, gnl|dasNov1|scaffold_133716 (2625-2889)
               

               
               1-192, gnl|echTel1|scaffold_317913 (85459-85183)
               

               
               1-192, gnl|hg17|chr2 (206376564-206376842)
               

               
               1-192, gnl|Hg17|chr2 (206376642-206376801)
               

               
               1-192, gnl|loxAfr1|scaffold_2750 (37062-37339)
               

               
               1-192, gnl|mm7|chr1 (62947930-62948206)
               

               
               1-192, gnl|Mm7|chr1 (62948009-62948184)
               

               
               1-192, gnl|monDom2|scaffold_39 (17859314-17859048)
               

               
               1-192, gnl|oryCun1|scaffold_206494 (298211-297933)
               

               
               1-192, gnl|panTro1|chr13 (96397441-96397734)
               

               
               1-192, gnl|rheMac2|chr12 (69568954-69569246)
               

               
               1-192, gnl|rn3|chr9 (61498840-61499147)

	1-192, gnl\|bosTau2\|chr2 (54614182-54613988)
	1-192, gnl\|canFam2\|chr37 (17296736-17297023)
	1-192, gnl\|dasNov1\|scaffold_133716 (2625-2889)
	1-192, gnl\|echTel1\|scaffold_317913 (85459-85183)
	1-192, gnl\|hg17\|chr2 (206376564-206376842)
	1-192, gnl\|Hg17\|chr2 (206376642-206376801)
	1-192, gnl\|loxAfr1\|scaffold_2750 (37062-37339)
	1-192, gnl\|mm7\|chr1 (62947930-62948206)
	1-192, gnl\|Mm7\|chr1 (62948009-62948184)
	1-192, gnl\|monDom2\|scaffold_39 (17859314-17859048)
	1-192, gnl\|oryCun1\|scaffold_206494 (298211-297933)
	1-192, gnl\|panTro1\|chr13 (96397441-96397734)
	1-192, gnl\|rheMac2\|chr12 (69568954-69569246)
	1-192, gnl\|rn3\|chr9 (61498840-61499147)