Non-Coding RNA Search

Ss1.1-Pig4-TMW8031B08.3

Sequence:


               
               TTATGTTCTGCAAGATACGTCTTGCTGAGAAAGTAACTGTATCCAGTGACCATGAGGAAA
TAGACAATCCAGAAGAAAAAGTAGAAGAAAAAGAAGAGGTTATAGATGACCAGGAGAACC
CAGCTCATAGCAGGAGGACTCGGGAAGATAGGAAGGTTGAAGCCATCATGCATGCTTTTG
AAAACTTAGAGAAAAGAAAGAAGCGGCGGGATCAGCCCTTGGAACAAAGCAGCTCTGACA
TAGAGGTTACTACCTCTACCTCAGAGACTCCTATGGGAGAAGAAACAAAAAATGAAGCCC
CTGAATCTGAAGTTAGCAACCCAGTTTCAAACATTGCCATCCCAAGCAACCCACAGAGTG
TTGGAGTAAACACCCGGAGGTCTTCCCAAGCAGGGGATGTTGCTGCAGAAAAACCAGTTC
CCAAACCACCTCTTTTGCTTATGTCTATTACCTATCTTTTTTGAATGCTTGTAGTCAGCA
TTTTCAACTTCGCGTTATATTGCAGTAAATAGGGCGGTTTATAATCAGCCAATCTGGGAG
TTCCCTTCATGGTGCAGCGAAAACGAATCCAACTAGGAACCATGAGGTTGCAGGTCCGAT
CCCTGGCCTTGCTCAGGGGTTAAGGATCCGGCATTGCCGTGAGCTGTGGTGTACAGACAC
AGCTCGGATCTGGTATTGCTGTGGCCATGGCATAGGCTGGCAGCTACTGCTCTGATTCAA
CCCCTAGCCTGGGAACCTCCATATGCTGCTAGTGCAGCCCTGGAAAAGACCAAAAAAATA
AAAATATTATCAGCCAGTCTGTGGGATTTGGAGAGACAGAATTTGAATGACTAGAATGCC
AGATAAATTCTTGGTGGTAAGTCCTTAAAAATCATTTGGGGAGTTCCC------------
------------------------------------------------------------
------------ACGTATGCTGCAAGTGCAGCTGTTTAAAAAAATTTTTTTTTTTAGTCA
TTTTGTTTCTCTTTGGCCCTCTGAATAGCACAGTTATATACCTGACCTTTCACAGGATTC
TCAGAATTAACTCTCCTTTCCTTTTCCTACCTTAGTTAGCCATGAATTCTAAGCCTTAAG
CTAAAACCTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATGTTCTGCAAGATACGTCTTGCTGAGAAAGTAACTGTATCCAGTGACCATGAGGAAA
TAGACAATCCAGAAGAAAAAGTAGAAGAAAAAGAAGAGGTTATAGATGACCAGGAGAACC
CAGCTCATAGCAGGAGGACTCGGGAAGATAGGAAGGTTGAAGCCATCATGCATGCTTTTG
AAAACTTAGAGAAAAGAAAGAAGCGGCGGGATCAGCCCTTGGAACAAAGCAGCTCTGACA
TAGAGGTTACTACCTCTACCTCAGAGACTCCTATGGGAGAAGAAACAAAAAATGAAGCCC
CTGAATCTGAAGTTAGCAACCCAGTTTCAAACATTGCCATCCCAAGCAACCCACAGAGTG
TTGGAGTAAACACCCGGAGGTCTTCCCAAGCAGGGGATGTTGCTGCAGAAAAACCAGTTC
CCAAACCACCTCTTTTGCTTATGTCTATTACCTATCTTTTTTGAATGCTTGTAGTCAGCA
TTTTCAACTTCGCGTTATATTGCAGTAAATAGGGCGGTTTATAATCAGCCAATCTGGGAG
TTCCCTTCATGGTGCAGCGAAAACGAATCCAACTAGGAACCATGAGGTTGCAGGTCCGAT
CCCTGGCCTTGCTCAGGGGTTAAGGATCCGGCATTGCCGTGAGCTGTGGTGTACAGACAC
AGCTCGGATCTGGTATTGCTGTGGCCATGGCATAGGCTGGCAGCTACTGCTCTGATTCAA
CCCCTAGCCTGGGAACCTCCATATGCTGCTAGTGCAGCCCTGGAAAAGACCAAAAAAATA
AAAATATTATCAGCCAGTCTGTGGGATTTGGAGAGACAGAATTTGAATGACTAGAATGCC
AGATAAATTCTTGGTGGTAAGTCCTTAAAAATCATTTGGGGAGTTCCC------------
------------------------------------------------------------
------------ACGTATGCTGCAAGTGCAGCTGTTTAAAAAAATTTTTTTTTTTAGTCA
TTTTGTTTCTCTTTGGCCCTCTGAATAGCACAGTTATATACCTGACCTTTCACAGGATTC
TCAGAATTAACTCTCCTTTCCTTTTCCTACCTTAGTTAGCCATGAATTCTAAGCCTTAAG
CTAAAACCTCAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               216-335, - strand, RNAz p=0.727887

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               216-335, - strand, RNAz p=0.727887

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               137-520, gnl|bosTau2|chr22 (14567096-14566719)
               

               
               137-520, gnl|Hg17|chr3 (9463733-9464109)
               

               
               137-520, gnl|Mm7|chr6 (113280343-113280717)
               


               
               934-1068, gnl|bosTau2|chr22 (14566593-14566469)
               

               
               934-1068, gnl|Mm7|chr6 (113280849-113280994)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               137-520, gnl|bosTau2|chr22 (14567096-14566719)
               

               
               137-520, gnl|Hg17|chr3 (9463733-9464109)
               

               
               137-520, gnl|Mm7|chr6 (113280343-113280717)
               


               
               934-1068, gnl|bosTau2|chr22 (14566593-14566469)
               

               
               934-1068, gnl|Mm7|chr6 (113280849-113280994)

	137-520, gnl\|bosTau2\|chr22 (14567096-14566719)
	137-520, gnl\|Hg17\|chr3 (9463733-9464109)
	137-520, gnl\|Mm7\|chr6 (113280343-113280717)

	934-1068, gnl\|bosTau2\|chr22 (14566593-14566469)
	934-1068, gnl\|Mm7\|chr6 (113280849-113280994)