Non-Coding RNA Search

Ss1.1-Pig4-TMW8031E09.3

Sequence:


               
               TTAAAATCCGTTTGGTGTTATGGATAGTAAAATACAAACTGCCATCATTTTCATAAAGAA
GTTGTTAAATAAACACTAGAAATATTTTTGCTCTCTTATTACACAGGAGTTGGCAAGTTT
TTCTGTAAAAGTCCAGGTAGTAGATATTTTTTAGGTTTTATAGGCCATGTAGTCTGTCAT
AACTAATCACCTTTGCTGTTGTAGTGCAAAAACAGCCATAGAAAATATATAACTGAATGT
GGCTATATCCCATAAAACTTTATTTCTATAAGCAAGTGCCCAGCTAAATTTGGCCCATAG
ACTGTAGTTTGCTGACCTTGTTATATCATAAAAGTTGAATTATCTGGGTATTTGTATTGC
AAAATGAACGTGAAGTCAGAATTTTTGTTGTTAAGTTTTACTACTTTTCCAAGTGAGTAC
CATTGTTTTTTACTGAAGATTACATTTTAAATGGAAAAAGACTTGTTTAATATATATGGG
TGTTGTCCATGGGAGTTCTTAGAAATCTTTCAAGCAGAGTGCTACTTAGAATCACATCAT
ATTTTGTCATTCTCTTTTGGATTCCTATATTAGTCCATTATTTGTAGTGAGTATACCTAG
TAAACCAAAAATACCTTGATAGAATAATTTATTACAAATTTAATCTCAGCTTAGGAAATG
AGGTCTTATACCTCTGGGTTTGGAGGTCTCAGGCTTAAAAGGCAATGGCTCAGTTGGATT
ATTAGGATCAACAGATTCAATGGCAATAAAAATTTCTTACTTTTTTGGGAACCTCCAGAT
CTTCCATTTTTAGAAAAAAGTTTAAAGTCTTCATCATCTCTTTGAGTTAACATTTATGAG
TTCTTTTCATTTGATTTTGTGCCCAATCCATGATTATTTCATTGGTTATGTGAAATATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAATCCGTTTGGTGTTATGGATAGTAAAATACAAACTGCCATCATTTTCATAAAGAA
GTTGTTAAATAAACACTAGAAATATTTTTGCTCTCTTATTACACAGGAGTTGGCAAGTTT
TTCTGTAAAAGTCCAGGTAGTAGATATTTTTTAGGTTTTATAGGCCATGTAGTCTGTCAT
AACTAATCACCTTTGCTGTTGTAGTGCAAAAACAGCCATAGAAAATATATAACTGAATGT
GGCTATATCCCATAAAACTTTATTTCTATAAGCAAGTGCCCAGCTAAATTTGGCCCATAG
ACTGTAGTTTGCTGACCTTGTTATATCATAAAAGTTGAATTATCTGGGTATTTGTATTGC
AAAATGAACGTGAAGTCAGAATTTTTGTTGTTAAGTTTTACTACTTTTCCAAGTGAGTAC
CATTGTTTTTTACTGAAGATTACATTTTAAATGGAAAAAGACTTGTTTAATATATATGGG
TGTTGTCCATGGGAGTTCTTAGAAATCTTTCAAGCAGAGTGCTACTTAGAATCACATCAT
ATTTTGTCATTCTCTTTTGGATTCCTATATTAGTCCATTATTTGTAGTGAGTATACCTAG
TAAACCAAAAATACCTTGATAGAATAATTTATTACAAATTTAATCTCAGCTTAGGAAATG
AGGTCTTATACCTCTGGGTTTGGAGGTCTCAGGCTTAAAAGGCAATGGCTCAGTTGGATT
ATTAGGATCAACAGATTCAATGGCAATAAAAATTTCTTACTTTTTTGGGAACCTCCAGAT
CTTCCATTTTTAGAAAAAAGTTTAAAGTCTTCATCATCTCTTTGAGTTAACATTTATGAG
TTCTTTTCATTTGATTTTGTGCCCAATCCATGATTATTTCATTGGTTATGTGAAATATAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               205-321, - strand, RNAz p=0.797916

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-321, - strand, RNAz p=0.797916

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-321, gnl|bosTau2|chr28 (22252645-22252967)
               

               
               1-321, gnl|canFam2|chr4 (26847837-26848083)
               

               
               1-321, gnl|hg17|chr10 (74475692-74475946)
               

               
               1-321, gnl|Hg17|chr10 (74476064-74475721)
               

               
               1-321, gnl|mm7|chr10 (58871603-58871381)
               

               
               1-321, gnl|Mm7|chr10 (58871272-58871572)
               

               
               1-321, gnl|oryCun1|scaffold_98973 (3671-3921)
               

               
               1-321, gnl|panTro1|chr8_random (39932413-39932670)
               

               
               1-321, gnl|rheMac2|chr9 (63900150-63899895)
               

               
               1-321, gnl|rn3|chrUn (15094019-15094233)
               


               
               444-815, gnl|bosTau2|chr28 (22253186-22253528)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-321, gnl|bosTau2|chr28 (22252645-22252967)
               

               
               1-321, gnl|canFam2|chr4 (26847837-26848083)
               

               
               1-321, gnl|hg17|chr10 (74475692-74475946)
               

               
               1-321, gnl|Hg17|chr10 (74476064-74475721)
               

               
               1-321, gnl|mm7|chr10 (58871603-58871381)
               

               
               1-321, gnl|Mm7|chr10 (58871272-58871572)
               

               
               1-321, gnl|oryCun1|scaffold_98973 (3671-3921)
               

               
               1-321, gnl|panTro1|chr8_random (39932413-39932670)
               

               
               1-321, gnl|rheMac2|chr9 (63900150-63899895)
               

               
               1-321, gnl|rn3|chrUn (15094019-15094233)
               


               
               444-815, gnl|bosTau2|chr28 (22253186-22253528)

	1-321, gnl\|bosTau2\|chr28 (22252645-22252967)
	1-321, gnl\|canFam2\|chr4 (26847837-26848083)
	1-321, gnl\|hg17\|chr10 (74475692-74475946)
	1-321, gnl\|Hg17\|chr10 (74476064-74475721)
	1-321, gnl\|mm7\|chr10 (58871603-58871381)
	1-321, gnl\|Mm7\|chr10 (58871272-58871572)
	1-321, gnl\|oryCun1\|scaffold_98973 (3671-3921)
	1-321, gnl\|panTro1\|chr8_random (39932413-39932670)
	1-321, gnl\|rheMac2\|chr9 (63900150-63899895)
	1-321, gnl\|rn3\|chrUn (15094019-15094233)

	444-815, gnl\|bosTau2\|chr28 (22253186-22253528)