Non-Coding RNA Search

Ss1.1-Pig4-TMW8031G02.3

Sequence:


               
               CGATTCCTCTCTGAGGAATCTGTGGGAAAAGAATACTGTAGCTCTTGCTCTGTTTACATG
TTTCTATCAGGAAAGAAACCCCGCCTGCCCTAGGGTGTTGGTGTTTTTGTCTGTGATAGG
GGCCTGTGGCTGCGTTGTAATGTCTGGGCCGTGTCTGGGGACTCCTTCCCACCTGCCCAG
CCAGGGTCTAGCCATCCCTGTGAAGAGGCTTCCTTTTCCTTCCTATGGCATAGGGAGCAC
CACCTTCGGCACATGCATCCGTGAGCCTACCCCTGGGCTACCTACCTTAGGCCCACCTCC
ACCCACAGTCCTGTATAGGAATCGTGTAAACAGGATGTCTCTGAGCCCTTGTCCCCAAAG
GGCCGGCCAAGGGCTGCCTGCCAACCTGGCTCCATCAGTCCTGTATAACCAAGTGATCGT
TGGCGGCTTGGCTACCCAGGCCCTCTGCTACCTCCCACCCTGCCATCGGGCAAGGGATGG
GCCCTTTTCTGTGAATTGACTACCTGTGGAAATGTGACCAATTAGTGTGAAATGCATGTT
TAGCAAATGTTAGGTACTGTATTTGAACCAATAAATGTGAATCCTTCTGCACATGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGATTCCTCTCTGAGGAATCTGTGGGAAAAGAATACTGTAGCTCTTGCTCTGTTTACATG
TTTCTATCAGGAAAGAAACCCCGCCTGCCCTAGGGTGTTGGTGTTTTTGTCTGTGATAGG
GGCCTGTGGCTGCGTTGTAATGTCTGGGCCGTGTCTGGGGACTCCTTCCCACCTGCCCAG
CCAGGGTCTAGCCATCCCTGTGAAGAGGCTTCCTTTTCCTTCCTATGGCATAGGGAGCAC
CACCTTCGGCACATGCATCCGTGAGCCTACCCCTGGGCTACCTACCTTAGGCCCACCTCC
ACCCACAGTCCTGTATAGGAATCGTGTAAACAGGATGTCTCTGAGCCCTTGTCCCCAAAG
GGCCGGCCAAGGGCTGCCTGCCAACCTGGCTCCATCAGTCCTGTATAACCAAGTGATCGT
TGGCGGCTTGGCTACCCAGGCCCTCTGCTACCTCCCACCCTGCCATCGGGCAAGGGATGG
GCCCTTTTCTGTGAATTGACTACCTGTGGAAATGTGACCAATTAGTGTGAAATGCATGTT
TAGCAAATGTTAGGTACTGTATTTGAACCAATAAATGTGAATCCTTCTGCACATGGAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               115-221, + strand, RNAz p=0.727414
               

               
               288-479, - strand, RNAz p=0.93993

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-221, + strand, RNAz p=0.727414
               

               
               288-479, - strand, RNAz p=0.93993

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               353-456, - strand, RNAmicro p=0.999586

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               353-456, - strand, RNAmicro p=0.999586

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-245, gnl|bosTau2|chr11 (72844845-72844575)
               

               
               3-245, gnl|Hg17|chr9 (124359762-124359493)
               

               
               3-245, gnl|Mm7|chr2 (38731285-38731050)
               


               
               248-596, gnl|bosTau2|chr11 (72844545-72844196)
               

               
               248-596, gnl|Hg17|chr9 (124359463-124359108)
               

               
               248-596, gnl|Mm7|chr2 (38731021-38730680)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-245, gnl|bosTau2|chr11 (72844845-72844575)
               

               
               3-245, gnl|Hg17|chr9 (124359762-124359493)
               

               
               3-245, gnl|Mm7|chr2 (38731285-38731050)
               


               
               248-596, gnl|bosTau2|chr11 (72844545-72844196)
               

               
               248-596, gnl|Hg17|chr9 (124359463-124359108)
               

               
               248-596, gnl|Mm7|chr2 (38731021-38730680)

	115-221, + strand, RNAz p=0.727414
	288-479, - strand, RNAz p=0.93993

	3-245, gnl\|bosTau2\|chr11 (72844845-72844575)
	3-245, gnl\|Hg17\|chr9 (124359762-124359493)
	3-245, gnl\|Mm7\|chr2 (38731285-38731050)

	248-596, gnl\|bosTau2\|chr11 (72844545-72844196)
	248-596, gnl\|Hg17\|chr9 (124359463-124359108)
	248-596, gnl\|Mm7\|chr2 (38731021-38730680)