Non-Coding RNA Search

Ss1.1-Pig4-TMW8031H17.3

Sequence:


               
               CTCCCCCTCACCACCTCCCCTCTCCGCAGTCTCCTCCGTGGTGTCCTCAGGGGATAACCT
GGAAGCCTCTCTCCCCATGATCTCTTTCAAGCAGGAGGAGTTAGAGAACGAGGATCTGAA
AGCCAGGGAAGAAGCCCAGGCTGCCGCGGAGCGGGCTGTCGTTCAGGAGACATTCAACAA
AAACTTTGTCTGCAACGTCTGTGAATCGCCTTTTCTTTCCATTAAAGATCTAACCAAACA
TTTATCCGTTCATGCTGAAGACTGGCCCTTCAAATGTGAATTTTGTGTGCAGCTCTTTAA
GGCTAAAACTGATTTGTCAGAACATCGCTTTTTGCTTCATGGAGTGGGGAATATCTTTGT
GTGTTCGGTTTGTAAAAAAGAATTTGCTTTTTTGTGCAATTTGCAGCAGCACCAGCGCGA
CCTCCACCCAGATGAGGCGTGCACACACCACGAGTTTGAAAGTGGCACCCTGAGGCCCCA
GAACTTTACAGACCCCAGCAAGGCACGTGCGGAGCACATGCAGGGTTTGCCGGAAGATCC
TTTGGAAACATCTAAGGAAGAAGAGGAGTTGAACGATTCTTCCGAAGAGCTTTACACAAC
CATAAAAATAATGGCTTCTGGAATAAAGACGAAAGATCCGGATGTCCGATTGGGTCTCAA
TCAGCATTACCCGAGCTTTAAACCGCCTCCATTTCAGTACCATCACCGCAGCCCCCTGGG
CATTGGCGTGACGGCCACAAATTTCACGACACACAACATCCCGCAGACGTTTACCACCGC
CATCCGCTGCACCAAGTGTGGGAAGGGTGTGGACAACATGCCCGAGCTGCACAAACACAT
CCTGGCGTGTGCTTCCGCTAGCGACAAGAAGAGGTACACCCCCAAGAAGAACCCCGTCCC
GTTGAAGCAGACCGTGCAGCCCAAAAACGGCGTGGTGGTTTTGGACAACGCCGGGAAGAA
TGCCTTCAGACGCATGGGGCAGCCCAAAAGGCTGAACTTCAGCGTCGAGCTCAGCAAGAT
GTCCTCGAATAAGCTCAAATTAAATGCGTTGAAGAAAAAAAACCAGCTTGTCCAGAAAGC
AATCCTTCAAAAAAACAAATCTGCCAAGCAGAAGGCCGACCTAAAACATGCCCCCGAGGC
CGCCTCGCACATCTGCCCGTACTGCAGCCGAGAGTTCACATACATCGGCAGCCTGAACAA
GCACGCCGCCTTCAGCTGTCCCAAAAAGCCTCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCCCTCACCACCTCCCCTCTCCGCAGTCTCCTCCGTGGTGTCCTCAGGGGATAACCT
GGAAGCCTCTCTCCCCATGATCTCTTTCAAGCAGGAGGAGTTAGAGAACGAGGATCTGAA
AGCCAGGGAAGAAGCCCAGGCTGCCGCGGAGCGGGCTGTCGTTCAGGAGACATTCAACAA
AAACTTTGTCTGCAACGTCTGTGAATCGCCTTTTCTTTCCATTAAAGATCTAACCAAACA
TTTATCCGTTCATGCTGAAGACTGGCCCTTCAAATGTGAATTTTGTGTGCAGCTCTTTAA
GGCTAAAACTGATTTGTCAGAACATCGCTTTTTGCTTCATGGAGTGGGGAATATCTTTGT
GTGTTCGGTTTGTAAAAAAGAATTTGCTTTTTTGTGCAATTTGCAGCAGCACCAGCGCGA
CCTCCACCCAGATGAGGCGTGCACACACCACGAGTTTGAAAGTGGCACCCTGAGGCCCCA
GAACTTTACAGACCCCAGCAAGGCACGTGCGGAGCACATGCAGGGTTTGCCGGAAGATCC
TTTGGAAACATCTAAGGAAGAAGAGGAGTTGAACGATTCTTCCGAAGAGCTTTACACAAC
CATAAAAATAATGGCTTCTGGAATAAAGACGAAAGATCCGGATGTCCGATTGGGTCTCAA
TCAGCATTACCCGAGCTTTAAACCGCCTCCATTTCAGTACCATCACCGCAGCCCCCTGGG
CATTGGCGTGACGGCCACAAATTTCACGACACACAACATCCCGCAGACGTTTACCACCGC
CATCCGCTGCACCAAGTGTGGGAAGGGTGTGGACAACATGCCCGAGCTGCACAAACACAT
CCTGGCGTGTGCTTCCGCTAGCGACAAGAAGAGGTACACCCCCAAGAAGAACCCCGTCCC
GTTGAAGCAGACCGTGCAGCCCAAAAACGGCGTGGTGGTTTTGGACAACGCCGGGAAGAA
TGCCTTCAGACGCATGGGGCAGCCCAAAAGGCTGAACTTCAGCGTCGAGCTCAGCAAGAT
GTCCTCGAATAAGCTCAAATTAAATGCGTTGAAGAAAAAAAACCAGCTTGTCCAGAAAGC
AATCCTTCAAAAAAACAAATCTGCCAAGCAGAAGGCCGACCTAAAACATGCCCCCGAGGC
CGCCTCGCACATCTGCCCGTACTGCAGCCGAGAGTTCACATACATCGGCAGCCTGAACAA
GCACGCCGCCTTCAGCTGTCCCAAAAAGCCTCTTTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|28175574|gb|AAH43456.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|28175574|gb|AAH43456.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               518-637, - strand, RNAz p=0.956118
               

               
               838-1077, + strand, RNAz p=0.749817

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               518-637, - strand, RNAz p=0.956118
               

               
               838-1077, + strand, RNAz p=0.749817

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-1236, gnl|bosTau2|chr16 (40175581-40174350)
               

               
               2-1236, gnl|Hg17|chr1 (13852810-13854047)
               

               
               2-1236, gnl|Mm7|chr4 (142545955-142544724)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1236, gnl|bosTau2|chr16 (40175581-40174350)
               

               
               2-1236, gnl|Hg17|chr1 (13852810-13854047)
               

               
               2-1236, gnl|Mm7|chr4 (142545955-142544724)

	518-637, - strand, RNAz p=0.956118
	838-1077, + strand, RNAz p=0.749817

	2-1236, gnl\|bosTau2\|chr16 (40175581-40174350)
	2-1236, gnl\|Hg17\|chr1 (13852810-13854047)
	2-1236, gnl\|Mm7\|chr4 (142545955-142544724)