Ss1.1-Pig4-TMW8031H23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCGACATCAGGGATTCTGCGGACATGGTAGAGCTACTGGACGGTTACACCCACCGAGT CCTAGTCCGTTTCAATGGAAGGAACCGCCCACCTCTGTCCTTTAATGTCTCTCTGGATTT TGTCATCTTGTATTTCTTCTCTGACCGCATCAATCAGGCCCAGGGATTTGCTGTCTTGTA CCAAGCCGTCAAGGAAGAACCGCCACAGGAGAGGCCCACTGCCAACCAGACAGTGGCTGA GGTGATCACCGAGCAGGCCAACTTCAGTGTCAGCGCTGCCTGGTCCTCCAAAGTCCTCTA CGTCATCACCACCAGCCCCAGCCACCCACCCCAGGCTGTCCCAGGATGGACGGTGTATGG CCTGGCAACACTCCTCATCCTCACCGTCACAGCCATCATAGCAAAGATACTTCTGCACCT CACGTCCAAATCCCATAGCGTTCCTGCTTCAGGGGACCTTAGGGATTGTCATCAACCAGG GACATCGGGAGAAATCTGGAGCATTTTTTATAAGCCTTCTACTTCGATTTCCATCTTTAA GAAGAAGCTCAAGGGTCAGAGTCAACAGGATGACCGTAACCTTCTTGTGAGTGACTAAAA GCCTCCACCCCATGCCCAGGACACAGATCTGTCTGTGCTCATGGCCGCTGGGGACCACCT GTCCCACGGAGCCTGGATTACACCTGCTTCATCGCTGCACTTAGGAGAGAGACTCGAGGC CCTGAGGCCCGTGCCTCCCTCATCTCTCTCTCTAATCTGGGAATGGGGGTGTCGGGACAT TGGGGCTGAGATGGCAGGTGGCTGTGTCCTGCACTGGGCTCAGGTACATTCTAAATGACT ATCAGGTAGTGGGTAGGTAGTGCTTCTTCTCTGTTTTGTCCACATAGATCACTTTCTCCT GGTTTTTGTGGCTCAAAACACAGCCAGAGAATTCTGAGGCTCTCCCAAACTTGGCCTGGT CCTGGGCATTAGTCCTCCAAAGCATTATGGAGACCCATGCTCTGTGCTGACTCTGAGGTT TTGCTCTCTGGGCTCTGGACAAGGATGGGCCTCTTCCAACCTGGGAGGGCCTGGGAAGTG GGTCTGGGGATCCCCATTCACATCAAACCTGATACCTTCACAACATAGGCTTCTTCCCAC AGCTCAGTGACCAGCAGAGCCAATTTGAGGGCTGATTCGAGAAAATATCCATTCACTTAT TCATGCCGCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCGACATCAGGGATTCTGCGGACATGGTAGAGCTACTGGACGGTTACACCCACCGAGT CCTAGTCCGTTTCAATGGAAGGAACCGCCCACCTCTGTCCTTTAATGTCTCTCTGGATTT TGTCATCTTGTATTTCTTCTCTGACCGCATCAATCAGGCCCAGGGATTTGCTGTCTTGTA CCAAGCCGTCAAGGAAGAACCGCCACAGGAGAGGCCCACTGCCAACCAGACAGTGGCTGA GGTGATCACCGAGCAGGCCAACTTCAGTGTCAGCGCTGCCTGGTCCTCCAAAGTCCTCTA CGTCATCACCACCAGCCCCAGCCACCCACCCCAGGCTGTCCCAGGATGGACGGTGTATGG CCTGGCAACACTCCTCATCCTCACCGTCACAGCCATCATAGCAAAGATACTTCTGCACCT CACGTCCAAATCCCATAGCGTTCCTGCTTCAGGGGACCTTAGGGATTGTCATCAACCAGG GACATCGGGAGAAATCTGGAGCATTTTTTATAAGCCTTCTACTTCGATTTCCATCTTTAA GAAGAAGCTCAAGGGTCAGAGTCAACAGGATGACCGTAACCTTCTTGTGAGTGACTAAAA GCCTCCACCCCATGCCCAGGACACAGATCTGTCTGTGCTCATGGCCGCTGGGGACCACCT GTCCCACGGAGCCTGGATTACACCTGCTTCATCGCTGCACTTAGGAGAGAGACTCGAGGC CCTGAGGCCCGTGCCTCCCTCATCTCTCTCTCTAATCTGGGAATGGGGGTGTCGGGACAT TGGGGCTGAGATGGCAGGTGGCTGTGTCCTGCACTGGGCTCAGGTACATTCTAAATGACT ATCAGGTAGTGGGTAGGTAGTGCTTCTTCTCTGTTTTGTCCACATAGATCACTTTCTCCT GGTTTTTGTGGCTCAAAACACAGCCAGAGAATTCTGAGGCTCTCCCAAACTTGGCCTGGT CCTGGGCATTAGTCCTCCAAAGCATTATGGAGACCCATGCTCTGTGCTGACTCTGAGGTT TTGCTCTCTGGGCTCTGGACAAGGATGGGCCTCTTCCAACCTGGGAGGGCCTGGGAAGTG GGTCTGGGGATCCCCATTCACATCAAACCTGATACCTTCACAACATAGGCTTCTTCCCAC AGCTCAGTGACCAGCAGAGCCAATTTGAGGGCTGATTCGAGAAAATATCCATTCACTTAT TCATGCCGCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-119, - strand, RNAz p=0.54053 | |
| 209-327, - strand, RNAz p=0.641667 | |
| 884-983, + strand, RNAz p=0.952119 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, - strand, RNAz p=0.54053 | |
| 209-327, - strand, RNAz p=0.641667 | |
| 884-983, + strand, RNAz p=0.952119 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC063787, + |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-185, gnl|bosTau2|chr17 (41249219-41249403) | |
| 1-185, gnl|canFam2|chr26 (25500076-25500316) | |
| 1-185, gnl|danRer3|chr5 (5965153-5964920) | |
| 1-185, gnl|dasNov1|scaffold_25889 (45126-45367) | |
| 1-185, gnl|fr1|chrUn (225961520-225961288) | |
| 1-185, gnl|galGal2|chr15 (7760171-7759928) | |
| 1-185, gnl|hg17|chr22 (27857990-27858230) | |
| 1-185, gnl|Hg17|chr22 (27858032-27858216) | |
| 1-185, gnl|loxAfr1|scaffold_149518 (3748-3507) | |
| 1-185, gnl|mm7|chr11 (5153928-5153688) | |
| 1-185, gnl|Mm7|chr11 (5153884-5153700) | |
| 1-185, gnl|monDom2|scaffold_594 (17188-16948) | |
| 1-185, gnl|oryCun1|scaffold_191378 (403-643) | |
| 1-185, gnl|panTro1|chr23 (27960376-27960616) | |
| 1-185, gnl|rheMac2|chr10 (72967294-72967534) | |
| 1-185, gnl|rn3|chr14 (85871469-85871229) | |
| 1-185, gnl|tetNig1|chr12 (4258913-4259152) | |
| 1-185, gnl|xenTro1|scaffold_2 (1364154-1364394) | |
| 209-343, gnl|bosTau2|chr3 (18712913-18713047) | |
| 209-343, gnl|Hg17|chr22 (27859189-27859323) | |
| 209-343, gnl|Mm7|chr11 (5151691-5151557) | |
| 427-669, gnl|bosTau2|chr17 (41253601-41253844) | |
| 427-669, gnl|Hg17|chr22 (27862483-27862725) | |
| 427-669, gnl|Mm7|chr11 (5147127-5146903) | |
| 671-1015, gnl|bosTau2|chr17 (41257034-41256680) | |
| 671-1015, gnl|Hg17|chr22 (27862833-27863230) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-185, gnl|bosTau2|chr17 (41249219-41249403) | |
| 1-185, gnl|canFam2|chr26 (25500076-25500316) | |
| 1-185, gnl|danRer3|chr5 (5965153-5964920) | |
| 1-185, gnl|dasNov1|scaffold_25889 (45126-45367) | |
| 1-185, gnl|fr1|chrUn (225961520-225961288) | |
| 1-185, gnl|galGal2|chr15 (7760171-7759928) | |
| 1-185, gnl|hg17|chr22 (27857990-27858230) | |
| 1-185, gnl|Hg17|chr22 (27858032-27858216) | |
| 1-185, gnl|loxAfr1|scaffold_149518 (3748-3507) | |
| 1-185, gnl|mm7|chr11 (5153928-5153688) | |
| 1-185, gnl|Mm7|chr11 (5153884-5153700) | |
| 1-185, gnl|monDom2|scaffold_594 (17188-16948) | |
| 1-185, gnl|oryCun1|scaffold_191378 (403-643) | |
| 1-185, gnl|panTro1|chr23 (27960376-27960616) | |
| 1-185, gnl|rheMac2|chr10 (72967294-72967534) | |
| 1-185, gnl|rn3|chr14 (85871469-85871229) | |
| 1-185, gnl|tetNig1|chr12 (4258913-4259152) | |
| 1-185, gnl|xenTro1|scaffold_2 (1364154-1364394) | |
| 209-343, gnl|bosTau2|chr3 (18712913-18713047) | |
| 209-343, gnl|Hg17|chr22 (27859189-27859323) | |
| 209-343, gnl|Mm7|chr11 (5151691-5151557) | |
| 427-669, gnl|bosTau2|chr17 (41253601-41253844) | |
| 427-669, gnl|Hg17|chr22 (27862483-27862725) | |
| 427-669, gnl|Mm7|chr11 (5147127-5146903) | |
| 671-1015, gnl|bosTau2|chr17 (41257034-41256680) | |
| 671-1015, gnl|Hg17|chr22 (27862833-27863230) |