Ss1.1-Pig4-TMW8031L01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAAGTTGCAGGGACAACTGGCCATCATACTGTTCCGTGCAGACAGCCAGCTCGCTCTC CCATTCATCAGAGAGCACCCTTAAGAGTTGTAACAGAAACTACAGGTAGCCTGTCTGGAG TCAGTATCACATCTGAATTGAATGAAGAATTGAATGATTTAATTCAGCGTTTTCACAATC AGCTTTGTGATTCTCAGCCTCCAGCCGTTCCAGACAACAGAAGACAGGCAGAAAGTCTTT CATTAACTAGAGAGGTTTCTCAGAGTAGAAATCCATCAGTTTCAGAACATTTACCTGATG AGAAAGTTCAACTTTTTAGCAAAATGAGAGTGTTGCAGGAAAAGAAACAAAAAATGGACA AACTGCTTGGAGAACTTCATACACTTCGAGATCAGCACTTGAACAATTCATCATTTGTGC CTTTTTCAGCCTCTCCACAAAGGAGTGTAGATCAGAGAAGTACAGCCGTGGCTCCCTCTG CTCCTGTAGGCTTAACACCAGTTGTCAATGGAGAATCCAATAGCCTCTCACCATCTGTTC CTTATCCTGCTGCTTCTCTAGTTTCTCAGAATCAGAGTGAAAATGAAGGCCACCTAAATC CAACTGAAAAACTCCAGAAGTTAAATGAAGTTAGAAAGAGATTGAATGAACTGAGAGAAT TAGTTCATTATTATGAACAAACATCAGATATGATGACTGATGCTGTAAATGAAAACACAA AAGATGAAGAAACTGAAGAGTCAGAATATGATTCTGAGCATGAAAATTCTGAACCTGTTA CTAACATTCGAAATCCACAAATAGCTGCCACCTGGAATGAAGTAAATAGTAATTCTAATG CACAGTGTGTTTCTAATAATAGAGATGGCAGATCAGTTAATTCTAATTGTGAAATTAACA ACAGATCTGCTGCCAACATAAGGGCTCTAAACATGCCTCCTTCTTTAGCAGACTGTCGAT ATAATAGAGAAGGAGAACAGCGGATTGCTGTTACACAAGGTGAAGATGATGAGGAAGAGG AGGAAGAGGTGGAAGATGAGGCAGTCAGTGGAGCTTCATTATCTAGTCATAGGAGCAGTC TGGTTGATGAGGCTCCTGAAGATGCTGAATTTGAACAGAAGATCAGTAGACTTATGGCTG CAAAACAGAAACTTAGACAATTACAAGATGTTGTTGCTATGGTGCAGGGTGACGATGCAA CAGATCAAGGAGTTACCTCTGCCAATACTTCAAATTTGGATGATTTCTACCCAGCAGAAG AAGATACCAAACAAAATGCAAATAACACTAGAGGAAATGCCAATAAAACACAGAAAGATG TTGGAATAAATGAAAAGGCAAGAGAGAAATTTTATGAGGCTAAACTACAGGAGCAACAGA GAGAGCTCAAACAATTGCAGGAAGAAAGAAAGAAACTGATTGAAATTCAAGAGAAAATTC AAGCATTGCAAAAGGCATGTCCTGACCTGCAGCTATCAGCCACTAGTGCCGGTAATTGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAAGTTGCAGGGACAACTGGCCATCATACTGTTCCGTGCAGACAGCCAGCTCGCTCTC CCATTCATCAGAGAGCACCCTTAAGAGTTGTAACAGAAACTACAGGTAGCCTGTCTGGAG TCAGTATCACATCTGAATTGAATGAAGAATTGAATGATTTAATTCAGCGTTTTCACAATC AGCTTTGTGATTCTCAGCCTCCAGCCGTTCCAGACAACAGAAGACAGGCAGAAAGTCTTT CATTAACTAGAGAGGTTTCTCAGAGTAGAAATCCATCAGTTTCAGAACATTTACCTGATG AGAAAGTTCAACTTTTTAGCAAAATGAGAGTGTTGCAGGAAAAGAAACAAAAAATGGACA AACTGCTTGGAGAACTTCATACACTTCGAGATCAGCACTTGAACAATTCATCATTTGTGC CTTTTTCAGCCTCTCCACAAAGGAGTGTAGATCAGAGAAGTACAGCCGTGGCTCCCTCTG CTCCTGTAGGCTTAACACCAGTTGTCAATGGAGAATCCAATAGCCTCTCACCATCTGTTC CTTATCCTGCTGCTTCTCTAGTTTCTCAGAATCAGAGTGAAAATGAAGGCCACCTAAATC CAACTGAAAAACTCCAGAAGTTAAATGAAGTTAGAAAGAGATTGAATGAACTGAGAGAAT TAGTTCATTATTATGAACAAACATCAGATATGATGACTGATGCTGTAAATGAAAACACAA AAGATGAAGAAACTGAAGAGTCAGAATATGATTCTGAGCATGAAAATTCTGAACCTGTTA CTAACATTCGAAATCCACAAATAGCTGCCACCTGGAATGAAGTAAATAGTAATTCTAATG CACAGTGTGTTTCTAATAATAGAGATGGCAGATCAGTTAATTCTAATTGTGAAATTAACA ACAGATCTGCTGCCAACATAAGGGCTCTAAACATGCCTCCTTCTTTAGCAGACTGTCGAT ATAATAGAGAAGGAGAACAGCGGATTGCTGTTACACAAGGTGAAGATGATGAGGAAGAGG AGGAAGAGGTGGAAGATGAGGCAGTCAGTGGAGCTTCATTATCTAGTCATAGGAGCAGTC TGGTTGATGAGGCTCCTGAAGATGCTGAATTTGAACAGAAGATCAGTAGACTTATGGCTG CAAAACAGAAACTTAGACAATTACAAGATGTTGTTGCTATGGTGCAGGGTGACGATGCAA CAGATCAAGGAGTTACCTCTGCCAATACTTCAAATTTGGATGATTTCTACCCAGCAGAAG AAGATACCAAACAAAATGCAAATAACACTAGAGGAAATGCCAATAAAACACAGAAAGATG TTGGAATAAATGAAAAGGCAAGAGAGAAATTTTATGAGGCTAAACTACAGGAGCAACAGA GAGAGCTCAAACAATTGCAGGAAGAAAGAAAGAAACTGATTGAAATTCAAGAGAAAATTC AAGCATTGCAAAAGGCATGTCCTGACCTGCAGCTATCAGCCACTAGTGCCGGTAATTGTC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 235-354, + strand, RNAz p=0.57437 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 235-354, + strand, RNAz p=0.57437 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 196-414, gnl|bosTau2|chr27 (12368652-12368434) | |
| 196-414, gnl|canFam2|chr16 (44199354-44199612) | |
| 196-414, gnl|danRer3|chr1 (12448001-12447725) | |
| 196-414, gnl|dasNov1|scaffold_187081 (230-6) | |
| 196-414, gnl|fr1|chrUn (18954779-18955081) | |
| 196-414, gnl|galGal2|chr4 (63329396-63329135) | |
| 196-414, gnl|hg17|chr8 (17854732-17854993) | |
| 196-414, gnl|Hg17|chr8 (17854757-17854975) | |
| 196-414, gnl|loxAfr1|scaffold_2329 (417-670) | |
| 196-414, gnl|mm7|chr8 (40057647-40057905) | |
| 196-414, gnl|Mm7|chr8 (40057669-40057887) | |
| 196-414, gnl|monDom2|scaffold_32 (12877946-12877697) | |
| 196-414, gnl|oryCun1|scaffold_199343 (6732-6477) | |
| 196-414, gnl|panTro1|chr7 (18648780-18649040) | |
| 196-414, gnl|rheMac2|chr8 (17842710-17842975) | |
| 196-414, gnl|rn3|chr16 (54384630-54384367) | |
| 196-414, gnl|tetNig1|chr18 (7685036-7685317) | |
| 196-414, gnl|xenTro1|scaffold_1260 (23935-24170) | |
| 415-624, gnl|bosTau2|chr27 (12366195-12365986) | |
| 415-624, gnl|canFam2|chr16 (44201720-44201876) | |
| 415-624, gnl|dasNov1|scaffold_13109 (7461-7309) | |
| 415-624, gnl|echTel1|scaffold_304958 (9826-9674) | |
| 415-624, gnl|galGal2|chr4 (63327947-63327797) | |
| 415-624, gnl|hg17|chr8 (17857235-17857379) | |
| 415-624, gnl|Hg17|chr8 (17857244-17857450) | |
| 415-624, gnl|loxAfr1|scaffold_2329 (2478-2629) | |
| 415-624, gnl|mm7|chr8 (40059510-40059662) | |
| 415-624, gnl|Mm7|chr8 (40059527-40059734) | |
| 415-624, gnl|monDom2|scaffold_32 (12869024-12868876) | |
| 415-624, gnl|oryCun1|scaffold_199343 (2661-2506) | |
| 415-624, gnl|panTro1|chr7 (18651290-18651434) | |
| 415-624, gnl|rheMac2|chr8 (17845187-17845327) | |
| 415-624, gnl|rn3|chr16 (54382736-54382585) | |
| 415-624, gnl|xenTro1|scaffold_1260 (24859-24993) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 196-414, gnl|bosTau2|chr27 (12368652-12368434) | |
| 196-414, gnl|canFam2|chr16 (44199354-44199612) | |
| 196-414, gnl|danRer3|chr1 (12448001-12447725) | |
| 196-414, gnl|dasNov1|scaffold_187081 (230-6) | |
| 196-414, gnl|fr1|chrUn (18954779-18955081) | |
| 196-414, gnl|galGal2|chr4 (63329396-63329135) | |
| 196-414, gnl|hg17|chr8 (17854732-17854993) | |
| 196-414, gnl|Hg17|chr8 (17854757-17854975) | |
| 196-414, gnl|loxAfr1|scaffold_2329 (417-670) | |
| 196-414, gnl|mm7|chr8 (40057647-40057905) | |
| 196-414, gnl|Mm7|chr8 (40057669-40057887) | |
| 196-414, gnl|monDom2|scaffold_32 (12877946-12877697) | |
| 196-414, gnl|oryCun1|scaffold_199343 (6732-6477) | |
| 196-414, gnl|panTro1|chr7 (18648780-18649040) | |
| 196-414, gnl|rheMac2|chr8 (17842710-17842975) | |
| 196-414, gnl|rn3|chr16 (54384630-54384367) | |
| 196-414, gnl|tetNig1|chr18 (7685036-7685317) | |
| 196-414, gnl|xenTro1|scaffold_1260 (23935-24170) | |
| 415-624, gnl|bosTau2|chr27 (12366195-12365986) | |
| 415-624, gnl|canFam2|chr16 (44201720-44201876) | |
| 415-624, gnl|dasNov1|scaffold_13109 (7461-7309) | |
| 415-624, gnl|echTel1|scaffold_304958 (9826-9674) | |
| 415-624, gnl|galGal2|chr4 (63327947-63327797) | |
| 415-624, gnl|hg17|chr8 (17857235-17857379) | |
| 415-624, gnl|Hg17|chr8 (17857244-17857450) | |
| 415-624, gnl|loxAfr1|scaffold_2329 (2478-2629) | |
| 415-624, gnl|mm7|chr8 (40059510-40059662) | |
| 415-624, gnl|Mm7|chr8 (40059527-40059734) | |
| 415-624, gnl|monDom2|scaffold_32 (12869024-12868876) | |
| 415-624, gnl|oryCun1|scaffold_199343 (2661-2506) | |
| 415-624, gnl|panTro1|chr7 (18651290-18651434) | |
| 415-624, gnl|rheMac2|chr8 (17845187-17845327) | |
| 415-624, gnl|rn3|chr16 (54382736-54382585) | |
| 415-624, gnl|xenTro1|scaffold_1260 (24859-24993) |