Ss1.1-Pig4-TMW8031L17.3
|
GTGGAAGGCAACTTACCTCTTCTTCACCTAAATTATATTCATCCAAAGGCTGAAGAAGAA
CCATCCTCCAGCTGTTGAAGATACAAACCAATTTCAAACAGCTTTTGTTACTATATTTAA
AAGGAGCAATTTTATTCTGTAAGTATGGCTAATGCAGTAGTGTTTTCTTTCCTTGGGGCC
TTCATAATTCAAATGGTTGTATTTTAGTACTTTATTTTTTAAAAGAGGTAAAATAGTTGT
ATTAGGAAAAGAGGACAAGGAGAAGATGAGGCTTTACTTCTGGCCTTAATGATAAACAGT
CTCCTGCCTAGTTACATTTTATATCTAAAAACTACTAATTTTGAAATCAGCAATATGCTG
ATAAACTGAAATCAGTGGTATGCTGATAAACTGACCCAGAAAATAAAAAGGAAAAAGCTC
TGATTTGTAGCATTTGCCAATTTCTTTGTGTGAAGACGACTGCCATCGTGACCTCTTGTA
TGAGTTTTAAGTGGATCACAGTATTCCTATGTGTTAAATCAGGCCAACCAGCCAGCTCCA
GCCTACCACTGTAAATTAAAATACCACATTGTTGCTGTAGAACATTGTAACTACAAATGT
TCTTTTTACTTATGTAAATTCTCATAATACCTCCTAGAGTATTAAGAGTTCTCTTAAGTA
CCTCAAAGTAATTATGAATAAAAGAATCAGAAATCAAGAGATGGGTAGGAATTACTGTAG
TTGTCACCCAGCTCATGTCTCTGTTTCCATCCTCTTCTATCTCTTCTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTGGAAGGCAACTTACCTCTTCTTCACCTAAATTATATTCATCCAAAGGCTGAAGAAGAA
CCATCCTCCAGCTGTTGAAGATACAAACCAATTTCAAACAGCTTTTGTTACTATATTTAA
AAGGAGCAATTTTATTCTGTAAGTATGGCTAATGCAGTAGTGTTTTCTTTCCTTGGGGCC
TTCATAATTCAAATGGTTGTATTTTAGTACTTTATTTTTTAAAAGAGGTAAAATAGTTGT
ATTAGGAAAAGAGGACAAGGAGAAGATGAGGCTTTACTTCTGGCCTTAATGATAAACAGT
CTCCTGCCTAGTTACATTTTATATCTAAAAACTACTAATTTTGAAATCAGCAATATGCTG
ATAAACTGAAATCAGTGGTATGCTGATAAACTGACCCAGAAAATAAAAAGGAAAAAGCTC
TGATTTGTAGCATTTGCCAATTTCTTTGTGTGAAGACGACTGCCATCGTGACCTCTTGTA
TGAGTTTTAAGTGGATCACAGTATTCCTATGTGTTAAATCAGGCCAACCAGCCAGCTCCA
GCCTACCACTGTAAATTAAAATACCACATTGTTGCTGTAGAACATTGTAACTACAAATGT
TCTTTTTACTTATGTAAATTCTCATAATACCTCCTAGAGTATTAAGAGTTCTCTTAAGTA
CCTCAAAGTAATTATGAATAAAAGAATCAGAAATCAAGAGATGGGTAGGAATTACTGTAG
TTGTCACCCAGCTCATGTCTCTGTTTCCATCCTCTTCTATCTCTTCTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-475, gnl|bosTau2|chr2 (55587480-55587025) |
|
1-475, gnl|Hg17|chr2 (210717510-210717956) |
|
1-475, gnl|Mm7|chr1 (66964250-66964681) |
| |
|
617-768, gnl|bosTau2|chr2 (55586877-55586726) |
|
617-768, gnl|canFam2|chr37 (20889825-20889976) |
|
617-768, gnl|echTel1|scaffold_286182 (58017-58173) |
|
617-768, gnl|hg17|chr2 (210718124-210718302) |
|
617-768, gnl|Hg17|chr2 (210718123-210718275) |
|
617-768, gnl|loxAfr1|scaffold_939 (91928-91755) |
|
617-768, gnl|mm7|chr1 (66964803-66964987) |
|
617-768, gnl|Mm7|chr1 (66964814-66964957) |
|
617-768, gnl|oryCun1|scaffold_190211 (1177-1007) |
|
617-768, gnl|panTro1|chr13 (100807087-100807265) |
|
617-768, gnl|rheMac2|chr12 (73808581-73808764) |
|
617-768, gnl|rn3|chr9 (65642624-65642808) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-475, gnl|bosTau2|chr2 (55587480-55587025) |
|
1-475, gnl|Hg17|chr2 (210717510-210717956) |
|
1-475, gnl|Mm7|chr1 (66964250-66964681) |
| |
|
617-768, gnl|bosTau2|chr2 (55586877-55586726) |
|
617-768, gnl|canFam2|chr37 (20889825-20889976) |
|
617-768, gnl|echTel1|scaffold_286182 (58017-58173) |
|
617-768, gnl|hg17|chr2 (210718124-210718302) |
|
617-768, gnl|Hg17|chr2 (210718123-210718275) |
|
617-768, gnl|loxAfr1|scaffold_939 (91928-91755) |
|
617-768, gnl|mm7|chr1 (66964803-66964987) |
|
617-768, gnl|Mm7|chr1 (66964814-66964957) |
|
617-768, gnl|oryCun1|scaffold_190211 (1177-1007) |
|
617-768, gnl|panTro1|chr13 (100807087-100807265) |
|
617-768, gnl|rheMac2|chr12 (73808581-73808764) |
|
617-768, gnl|rn3|chr9 (65642624-65642808) |
