Non-Coding RNA Search

Ss1.1-Pig4-TMW8031M07.5

Sequence:


               
               CAAAGGGGGCTGCTGCAGGGGCACAGATGGGCAAGAAGCAGCAGCAGAGCACAGCACTGC
AGACATCTGCCCAGGCCCCTGCCAACCTCCTGCCCAAAGCCGTGCACCTGGCCAACCTGA
ATCTGGTCCCCCACAGTGTCGCCGCATCAGTGACAGCCAAGTCCTCAGTGCAGAGGCGGA
GCCAGCCGCAGCTCACCCAGATGTCGGTGCCCCTAGTCCACCAGGTGAAAAAGGCTGCCC
CACTGGTTGTAGAGGTCTTCAACAAGGTCCTCCATAGCTCCAACCCTGTGCCCCTCTATG
CACCAAATCTCAGCCCTCCCGCGGACAGCAGGATCCACGTGCCGGCCAGTGGGTACTGCT
GCCTGGAGTGTGGGGACGCTTTTGCCTTAGAGAAGAGCCTGAGCCAGCACTACGGCCGGC
GGAGCGTCCACATCGAGGTGCTGTGCACACTGTGCTCCCAGACGCTGCTCTTCTTCAACA
AGTGCAGCCTGCTCCGGCACGCCCGTGACCACAAGAGCAAGGGGCTCGTCATGCAGTGCT
CTCAGCTGCTCGTGAAGCCCATCTCTGCGGACCAAATGTTCGTGTCAGCCCCTTCGAACT
CTACGGCACCAGCAACCCCAGCTCCTCCTTCCTCCCCCAAACACGGCCTCACTTCAAGCA
ATGCCAGCCTTCCCCTTCCAGCTTTGCCGCTCTACCCAGATCCTGTGAGGCTCATCCGGC
ACAGTATCAAGTGTCTCGAATGTCACAAGCAGATGCGCGACTACATGGCTATGGCTGCAC
ATTTCCAGAGGATGACGGAGGAAACCGAGGGGCTGACTTGCCAGGTGTGCCAGATGCTGC
TACCCAACCAGTGCAGTTTCTGTGCCCACCAGCGGATCCACGCCCACAAGTCCCCCTACT
GTTGTCCGGAGTGTGGAGCCCTCTGTCGCTCTGCCTACTTCCAGACCCACGTAAAGGAGA
ATTGCCTGCACTATGCCCGCAAGGTGGGCTACAGGTGCATCCACTGTGGGGTCGTCCACT
TGACCTTGGCTTTGCTGAAAAGCCACATCCAGGAGCGACACTGCCATGTTTTCCACAAAT
GTGCATTCTGCCCCATGGCCTTCAAGACTGCCAGTAGCACCGCGGACCACAGCGCCACCC
AGCATCCCACTCAGCCCCACAGACCCTCCCAGCTCATTTATAAGTGCTCCTGTGAAATGG
TCTTCAACAAGAAGAGGCACATTCAGCAGCATTTTTACCAGAATGCCAGCAAGGTGCAGG
TGGGCGTCTTTAAGTGCCCTGAGTGCCCGCTCTTGTTCCTGCAGAAGCCGGAGTTGATGC
AGCACGTCAAGAGCACGCACGGTGTTCCCCGGAACGTGGACCAGCTGTCAAGTCTCCAGT
CTTCAGCAGACACGTCCTCAAGCCGCCCTGGCTCTCGAGTTCCCACTGAGCCCCCAGCCC
CCAGTGGGGCTGCTCGGGGCAGCTCCCTGCCTTCTAGCCGCTGGGGCAGGCCTGAAGCCC
ATCGCAGGGGTGAGACTAGGCCCCGGCTGAGGAACACCGGCTGGACCTGCCAGGAGTGCC
AGGAGTGGGTTCCTGACCGGGAGAGCTATGTGTCCCACATGAAAAAGAGCCATGGTCGGA
CATTGAAGCGGTACCCGTGTCGGCAGTGTGAACAGTCCTTCCACACCCCCAACAGCCTGC
GCAAACACATCCGCAACAACCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGGGGGCTGCTGCAGGGGCACAGATGGGCAAGAAGCAGCAGCAGAGCACAGCACTGC
AGACATCTGCCCAGGCCCCTGCCAACCTCCTGCCCAAAGCCGTGCACCTGGCCAACCTGA
ATCTGGTCCCCCACAGTGTCGCCGCATCAGTGACAGCCAAGTCCTCAGTGCAGAGGCGGA
GCCAGCCGCAGCTCACCCAGATGTCGGTGCCCCTAGTCCACCAGGTGAAAAAGGCTGCCC
CACTGGTTGTAGAGGTCTTCAACAAGGTCCTCCATAGCTCCAACCCTGTGCCCCTCTATG
CACCAAATCTCAGCCCTCCCGCGGACAGCAGGATCCACGTGCCGGCCAGTGGGTACTGCT
GCCTGGAGTGTGGGGACGCTTTTGCCTTAGAGAAGAGCCTGAGCCAGCACTACGGCCGGC
GGAGCGTCCACATCGAGGTGCTGTGCACACTGTGCTCCCAGACGCTGCTCTTCTTCAACA
AGTGCAGCCTGCTCCGGCACGCCCGTGACCACAAGAGCAAGGGGCTCGTCATGCAGTGCT
CTCAGCTGCTCGTGAAGCCCATCTCTGCGGACCAAATGTTCGTGTCAGCCCCTTCGAACT
CTACGGCACCAGCAACCCCAGCTCCTCCTTCCTCCCCCAAACACGGCCTCACTTCAAGCA
ATGCCAGCCTTCCCCTTCCAGCTTTGCCGCTCTACCCAGATCCTGTGAGGCTCATCCGGC
ACAGTATCAAGTGTCTCGAATGTCACAAGCAGATGCGCGACTACATGGCTATGGCTGCAC
ATTTCCAGAGGATGACGGAGGAAACCGAGGGGCTGACTTGCCAGGTGTGCCAGATGCTGC
TACCCAACCAGTGCAGTTTCTGTGCCCACCAGCGGATCCACGCCCACAAGTCCCCCTACT
GTTGTCCGGAGTGTGGAGCCCTCTGTCGCTCTGCCTACTTCCAGACCCACGTAAAGGAGA
ATTGCCTGCACTATGCCCGCAAGGTGGGCTACAGGTGCATCCACTGTGGGGTCGTCCACT
TGACCTTGGCTTTGCTGAAAAGCCACATCCAGGAGCGACACTGCCATGTTTTCCACAAAT
GTGCATTCTGCCCCATGGCCTTCAAGACTGCCAGTAGCACCGCGGACCACAGCGCCACCC
AGCATCCCACTCAGCCCCACAGACCCTCCCAGCTCATTTATAAGTGCTCCTGTGAAATGG
TCTTCAACAAGAAGAGGCACATTCAGCAGCATTTTTACCAGAATGCCAGCAAGGTGCAGG
TGGGCGTCTTTAAGTGCCCTGAGTGCCCGCTCTTGTTCCTGCAGAAGCCGGAGTTGATGC
AGCACGTCAAGAGCACGCACGGTGTTCCCCGGAACGTGGACCAGCTGTCAAGTCTCCAGT
CTTCAGCAGACACGTCCTCAAGCCGCCCTGGCTCTCGAGTTCCCACTGAGCCCCCAGCCC
CCAGTGGGGCTGCTCGGGGCAGCTCCCTGCCTTCTAGCCGCTGGGGCAGGCCTGAAGCCC
ATCGCAGGGGTGAGACTAGGCCCCGGCTGAGGAACACCGGCTGGACCTGCCAGGAGTGCC
AGGAGTGGGTTCCTGACCGGGAGAGCTATGTGTCCCACATGAAAAAGAGCCATGGTCGGA
CATTGAAGCGGTACCCGTGTCGGCAGTGTGAACAGTCCTTCCACACCCCCAACAGCCTGC
GCAAACACATCCGCAACAACCATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28386015|gb|AAH44728.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28386015|gb|AAH44728.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-1568, - strand, RNAz p=0.920741

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-1568, - strand, RNAz p=0.920741

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               2-815, gnl|bosTau2|chr21 (12796906-12797719)
               

               
               2-815, gnl|Hg17|chr15 (83128320-83129130)
               

               
               2-815, gnl|Mm7|chr7 (76896145-76896952)
               


               
               992-1172, gnl|bosTau2|chr21 (12813058-12813238)
               

               
               992-1172, gnl|Hg17|chr15 (83142101-83142281)
               

               
               992-1172, gnl|Mm7|chr7 (76908790-76908970)
               


               
               1330-1619, gnl|bosTau2|chr21 (12813791-12814080)
               

               
               1330-1619, gnl|Hg17|chr15 (83142821-83143110)
               

               
               1330-1619, gnl|Mm7|chr7 (76909505-76909794)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-815, gnl|bosTau2|chr21 (12796906-12797719)
               

               
               2-815, gnl|Hg17|chr15 (83128320-83129130)
               

               
               2-815, gnl|Mm7|chr7 (76896145-76896952)
               


               
               992-1172, gnl|bosTau2|chr21 (12813058-12813238)
               

               
               992-1172, gnl|Hg17|chr15 (83142101-83142281)
               

               
               992-1172, gnl|Mm7|chr7 (76908790-76908970)
               


               
               1330-1619, gnl|bosTau2|chr21 (12813791-12814080)
               

               
               1330-1619, gnl|Hg17|chr15 (83142821-83143110)
               

               
               1330-1619, gnl|Mm7|chr7 (76909505-76909794)

	2-815, gnl\|bosTau2\|chr21 (12796906-12797719)
	2-815, gnl\|Hg17\|chr15 (83128320-83129130)
	2-815, gnl\|Mm7\|chr7 (76896145-76896952)

	992-1172, gnl\|bosTau2\|chr21 (12813058-12813238)
	992-1172, gnl\|Hg17\|chr15 (83142101-83142281)
	992-1172, gnl\|Mm7\|chr7 (76908790-76908970)

	1330-1619, gnl\|bosTau2\|chr21 (12813791-12814080)
	1330-1619, gnl\|Hg17\|chr15 (83142821-83143110)
	1330-1619, gnl\|Mm7\|chr7 (76909505-76909794)