Non-Coding RNA Search

Ss1.1-Pig4-TMW8031P12.3

Sequence:


               
               CTTCACATTAGGTTCCACAGGCCCTTTTCCCTTCAAACTTACAAAAATTCAAAATTAACT
GAGGATGTTAACAAGATACAAACATACTAACATAGTCTTCTACCTGTTGTGACTTTTTCC
AAGGTGCTCAGAGGAAATTTTTCCTGTTCAAATTACATTCCTTAGTTATTCAAACACATC
GTTTTCTAAAATGTTCAAATACATTCTAGATCGCGACTGAAGTTTTTTTTTTTTTTTTTT
TAGGCTCCAGTCCATAGTTTTACAATGCAGATGCTCTTCAAAAACACCATATTAAAAAAT
CATATAAACTAAAAGGTGACAATGGAGAATTAAATCTCTCATTACTAAGGCGGCACTTGG
CTTGGAAAAATGTCTGGGTTGGTTTTAATTCAGGCATATGCAGCACCTCCTTCTCACTAA
ATTGAGACAACAGACAAGTTTCTAAACACATATTCTAAATACACTGATCTTGCTCAAATA
TAAAAGAGCCAGCAGGAGAGATGCACCTCCTAAAACTGATGCAGTGTTATAAAACAGCAT
TTAAATATTGGGTTTAAGTCTCCTAATAATGCATGGTATTTCCCTCATTTTCTTTCAGGA
AGGAATAAGCTATTTTGGAAAAGACACTTAAATCCCACAATATTTAAATATAAAAGCATT
TTTTAAAAGATAATGCTAATATAGCTAAAAATGGGTTAGAAAGTGCATTGTAAAGAAATA
AATAATTCTCTGCTAAAACTCAAAAGGTGAGTCAGTGCCCACTGATTTCACTACTACGAC
AAAAGTCCTTTGAAAAAAGAGAATCCTATGGTACCACTTTGTTACATATGAACTATTTAA
AATTATGAAGAGTGAAATAACTGAAATCTAAAGGCTGTTACTTTCAAAGCACTTTTGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCACATTAGGTTCCACAGGCCCTTTTCCCTTCAAACTTACAAAAATTCAAAATTAACT
GAGGATGTTAACAAGATACAAACATACTAACATAGTCTTCTACCTGTTGTGACTTTTTCC
AAGGTGCTCAGAGGAAATTTTTCCTGTTCAAATTACATTCCTTAGTTATTCAAACACATC
GTTTTCTAAAATGTTCAAATACATTCTAGATCGCGACTGAAGTTTTTTTTTTTTTTTTTT
TAGGCTCCAGTCCATAGTTTTACAATGCAGATGCTCTTCAAAAACACCATATTAAAAAAT
CATATAAACTAAAAGGTGACAATGGAGAATTAAATCTCTCATTACTAAGGCGGCACTTGG
CTTGGAAAAATGTCTGGGTTGGTTTTAATTCAGGCATATGCAGCACCTCCTTCTCACTAA
ATTGAGACAACAGACAAGTTTCTAAACACATATTCTAAATACACTGATCTTGCTCAAATA
TAAAAGAGCCAGCAGGAGAGATGCACCTCCTAAAACTGATGCAGTGTTATAAAACAGCAT
TTAAATATTGGGTTTAAGTCTCCTAATAATGCATGGTATTTCCCTCATTTTCTTTCAGGA
AGGAATAAGCTATTTTGGAAAAGACACTTAAATCCCACAATATTTAAATATAAAAGCATT
TTTTAAAAGATAATGCTAATATAGCTAAAAATGGGTTAGAAAGTGCATTGTAAAGAAATA
AATAATTCTCTGCTAAAACTCAAAAGGTGAGTCAGTGCCCACTGATTTCACTACTACGAC
AAAAGTCCTTTGAAAAAAGAGAATCCTATGGTACCACTTTGTTACATATGAACTATTTAA
AATTATGAAGAGTGAAATAACTGAAATCTAAAGGCTGTTACTTTCAAAGCACTTTTGGAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               279-398, - strand, RNAz p=0.793259
               

               
               439-556, - strand, RNAz p=0.997843
               

               
               597-712, + strand, RNAz p=0.940031

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-398, - strand, RNAz p=0.793259
               

               
               439-556, - strand, RNAz p=0.997843
               

               
               597-712, + strand, RNAz p=0.940031

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               439-556, AM036873 KN-252-spleen, Bos indicus Bos indicus cDNA clone 
(emb|AM036873.1|), blast E-value=0, identity=100% 
               

               
               439-556, LB0233.CR_N20 GC_BGC-23 Bos taurus cDNA clone IMAGE (gb|DV852411.1|), 
blast E-value=0, identity=100% 
               

               
               439-556, 000312BSPB008363HT BSPB Bos taurus cDNA, mRNA sequence 
(gb|DY038155.1|), blast E-value=0, identity=100% 
               

               
               440-556, 000310BSPB007279HT BSPB Bos taurus cDNA, mRNA sequence 
(gb|DY127369.1|), blast E-value=0, identity=98.29% 
               

               
               439-556, LB02968.CR_N10 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE365019.1|), 
blast E-value=0, identity=100% 
               

               
               439-556, LB030108.CR_D19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE376308.1|), 
blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               439-556, AM036873 KN-252-spleen, Bos indicus Bos indicus cDNA clone 
(emb|AM036873.1|), blast E-value=0, identity=100% 
               

               
               439-556, LB0233.CR_N20 GC_BGC-23 Bos taurus cDNA clone IMAGE (gb|DV852411.1|), 
blast E-value=0, identity=100% 
               

               
               439-556, 000312BSPB008363HT BSPB Bos taurus cDNA, mRNA sequence 
(gb|DY038155.1|), blast E-value=0, identity=100% 
               

               
               440-556, 000310BSPB007279HT BSPB Bos taurus cDNA, mRNA sequence 
(gb|DY127369.1|), blast E-value=0, identity=98.29% 
               

               
               439-556, LB02968.CR_N10 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE365019.1|), 
blast E-value=0, identity=100% 
               

               
               439-556, LB030108.CR_D19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE376308.1|), 
blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-895, gnl|bosTau2|chr16 (53888260-53887374)
               

               
               1-895, gnl|Hg17|chr1 (208134187-208135056)
               

               
               1-895, gnl|Mm7|chr1 (191465337-191464534)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-895, gnl|bosTau2|chr16 (53888260-53887374)
               

               
               1-895, gnl|Hg17|chr1 (208134187-208135056)
               

               
               1-895, gnl|Mm7|chr1 (191465337-191464534)

	279-398, - strand, RNAz p=0.793259
	439-556, - strand, RNAz p=0.997843
	597-712, + strand, RNAz p=0.940031

	439-556, AM036873 KN-252-spleen, Bos indicus Bos indicus cDNA clone (emb\|AM036873.1\|), blast E-value=0, identity=100%
	439-556, LB0233.CR_N20 GC_BGC-23 Bos taurus cDNA clone IMAGE (gb\|DV852411.1\|), blast E-value=0, identity=100%
	439-556, 000312BSPB008363HT BSPB Bos taurus cDNA, mRNA sequence (gb\|DY038155.1\|), blast E-value=0, identity=100%
	440-556, 000310BSPB007279HT BSPB Bos taurus cDNA, mRNA sequence (gb\|DY127369.1\|), blast E-value=0, identity=98.29%
	439-556, LB02968.CR_N10 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE365019.1\|), blast E-value=0, identity=100%
	439-556, LB030108.CR_D19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE376308.1\|), blast E-value=0, identity=100%

	1-895, gnl\|bosTau2\|chr16 (53888260-53887374)
	1-895, gnl\|Hg17\|chr1 (208134187-208135056)
	1-895, gnl\|Mm7\|chr1 (191465337-191464534)