Non-Coding RNA Search

Ss1.1-Pig4-TMW8032C06.5

Sequence:


               
               GGGAGCGAGAGCAGCGTTCTGTTTTATCAGGAAAGCAAACACTTACTCAGAATTCTCAAA
ACAGACTTCTCCTTAGGGTCATTAGCCAGAACCTGGTAACATGACTGCCCACAGCAGCAA
GTGAGATCGAAAAGATGGGCAACAGGATGGTCTAGGTTGGCTTAAGCCAATCAATCATGA
ACCATCACTTAGGGCTGAGCATGTTGCTGTTGGAACAAAAACCAGGGTTCAGTGATCAAG
GCAGAAGGGGGACAGTGGCTATCGAATGGGCAGGTAACTGCCAGATAATCCAACTGTCCA
TCAGTGAGGGCTGGGAGTTGATTAAATTGTGAAGCAGTCCTACTGTGTCATACTTTGTAG
CCATTCAGGTGAGTAAGGTAGAACTGTGTACCATGGTAGAGAAGAATATTCTTATTACAT
TATGGATTTAAAATAGCTTGTAGAAAAGTATGTATAGCATGATCCCATTTAAAAAATATA
TCAGGGTACATATCAAATTGTTAATATTAATTACCCAAGGAGTGAGTAGACTTTCACTTT
TCATTATTTCTATATTTGAACTTTTAATACATGTAAAACTGTGCAGTTAACTATGTGTAT
TCATACGCATTTATAACACCAGGAAGTAGAGAGGCCTTCAGGGCTCAACCCCAGGTATTT
TCCCTCACACTTATGTGCCCAATTTCATTTACCAGTTATACTCCATGGCTTCCAGGTTGT
CTTAGCCAGCATACATAACCAACTCAGAGTCCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGCGAGAGCAGCGTTCTGTTTTATCAGGAAAGCAAACACTTACTCAGAATTCTCAAA
ACAGACTTCTCCTTAGGGTCATTAGCCAGAACCTGGTAACATGACTGCCCACAGCAGCAA
GTGAGATCGAAAAGATGGGCAACAGGATGGTCTAGGTTGGCTTAAGCCAATCAATCATGA
ACCATCACTTAGGGCTGAGCATGTTGCTGTTGGAACAAAAACCAGGGTTCAGTGATCAAG
GCAGAAGGGGGACAGTGGCTATCGAATGGGCAGGTAACTGCCAGATAATCCAACTGTCCA
TCAGTGAGGGCTGGGAGTTGATTAAATTGTGAAGCAGTCCTACTGTGTCATACTTTGTAG
CCATTCAGGTGAGTAAGGTAGAACTGTGTACCATGGTAGAGAAGAATATTCTTATTACAT
TATGGATTTAAAATAGCTTGTAGAAAAGTATGTATAGCATGATCCCATTTAAAAAATATA
TCAGGGTACATATCAAATTGTTAATATTAATTACCCAAGGAGTGAGTAGACTTTCACTTT
TCATTATTTCTATATTTGAACTTTTAATACATGTAAAACTGTGCAGTTAACTATGTGTAT
TCATACGCATTTATAACACCAGGAAGTAGAGAGGCCTTCAGGGCTCAACCCCAGGTATTT
TCCCTCACACTTATGTGCCCAATTTCATTTACCAGTTATACTCCATGGCTTCCAGGTTGT
CTTAGCCAGCATACATAACCAACTCAGAGTCCCCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               55-327, + strand, RNAz p=0.999841

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               55-327, + strand, RNAz p=0.999841

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               17-579, gnl|bosTau2|chr10 (2101930-2102467)
               

               
               17-579, gnl|Hg17|chr5 (76397991-76398505)
               


               
               612-742, gnl|bosTau2|chr10 (2102794-2102924)
               

               
               612-742, gnl|canFam2|chr3 (32531367-32531263)
               

               
               612-742, gnl|dasNov1|scaffold_104009 (5278-5424)
               

               
               612-742, gnl|hg17|chr5 (76398574-76398718)
               

               
               612-742, gnl|Hg17|chr5 (76398594-76398724)
               

               
               612-742, gnl|panTro1|chr4 (39020302-39020158)
               

               
               612-742, gnl|rheMac2|chr6 (73205701-73205844)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-579, gnl|bosTau2|chr10 (2101930-2102467)
               

               
               17-579, gnl|Hg17|chr5 (76397991-76398505)
               


               
               612-742, gnl|bosTau2|chr10 (2102794-2102924)
               

               
               612-742, gnl|canFam2|chr3 (32531367-32531263)
               

               
               612-742, gnl|dasNov1|scaffold_104009 (5278-5424)
               

               
               612-742, gnl|hg17|chr5 (76398574-76398718)
               

               
               612-742, gnl|Hg17|chr5 (76398594-76398724)
               

               
               612-742, gnl|panTro1|chr4 (39020302-39020158)
               

               
               612-742, gnl|rheMac2|chr6 (73205701-73205844)

	17-579, gnl\|bosTau2\|chr10 (2101930-2102467)
	17-579, gnl\|Hg17\|chr5 (76397991-76398505)

	612-742, gnl\|bosTau2\|chr10 (2102794-2102924)
	612-742, gnl\|canFam2\|chr3 (32531367-32531263)
	612-742, gnl\|dasNov1\|scaffold_104009 (5278-5424)
	612-742, gnl\|hg17\|chr5 (76398574-76398718)
	612-742, gnl\|Hg17\|chr5 (76398594-76398724)
	612-742, gnl\|panTro1\|chr4 (39020302-39020158)
	612-742, gnl\|rheMac2\|chr6 (73205701-73205844)