Non-Coding RNA Search

Ss1.1-Pig4-TMW8032G19.3

Sequence:


               
               AAAGATCGTCCTAGAGGCAGGAAACGGATTGCCGTCCTGGAAATTCAACGACCAGCTTTT
CCCCTGTGACGTGTGTGGGAAAGTGTTTGGCCGACAGCAGACGTTGTCTCGGCATCTCTC
GCTGCACACAGGTGAGTCCGAGCCCGCTCCCTCCTGCCGCGCCCTCTGGATCGCCGGCTT
CAACAAGCTGCCTTTTCTAAGAGACGTGTAGCTGGAATGGTGGGATCGTCTTTATCCTGA
CCTTTTCGAGCCATCTTCCCTGGCAGGTTCAAATAAGACTCTTGGAAAGGGTTTCGGTAT
TTGTGTTGAAAGGACCCATTGAGTTCAAGGAGGATTGATGAGAAAAGATACACGTGTGGG
TGTGTCCAGGTAAAATCGCTCAGCCCTGAGGAGTTTACTGCCCACATCTTGAGGGTGCAG
AGGGGCTGGGGCTGCACCCCATCTTATTGTCAGAGGTGGGAGCAGAGCGGGAAAGAGCCC
CTTGGTGGAGAAACAGTCTCTTGTCTTTATTTACATAGAATAGTAAAAAACATGGTTTGT
TCTGAGTGGTGGGAACTGGAAGAGCAAATAAATAGTAACTTAATCAATGCAGCAATAATA
ATCCAGGACAAAAGGAGTTAGGTCAAAGTGATATTAAATAAAGCAGAGTTCTCTCGTGGT
GCAGCAGGTTAAGGATCCTGTGTCGTCACTGCTGTGGTGTGAGTTTAATCTCTGACTCCA
GAACTTTCGCATGCTGTGGGCAAGTCCACACACACACACACACACACACACACACACACA
CAGTAAACAAAAAGAAAGATGGAAAGAAGAAAATGAAGTGTTTCAATTTTTACACTGTTA
AAAATTCAAAAGTGTCTTATTTACAGGAAACACAAAACAAAGTGAAAAAAAAAGGTTTTG
TATATCACACAAAATAAAAAAGAAGGCAAAAGACAAACAGTATTAGTATAAGATCAGTTT
TCTCTTTTTATGTATATATTTTTTTATATTTTGGGGAGCCATGTCCTT------------
------------------------------------------------------------
------------------------------------------------AATCTTAAATAT
TAAACCACTAAAGACAAAATTTAGTCATATACTTAGCCATGAAGAAAATTTTCACATGTT
CAAAAGAGTAGACGTTCTATAGGCCACATTCACTGAGCAAAATTAAATGAAATTTAGAAT
AACTGAGGATCACAAAATGGCCTACCTAACTGAATCAAAGAAAAGGAAGAAAATCTCAAA
TTCTAGACTTCCAGAAGGAATGTTAGGAGAACTTCATACAAAACCTGGAACAAACAGCTA
CAGCTCGGTCCAAGAAACATTTATAGACTTAAACGTTTTAATTAGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGATCGTCCTAGAGGCAGGAAACGGATTGCCGTCCTGGAAATTCAACGACCAGCTTTT
CCCCTGTGACGTGTGTGGGAAAGTGTTTGGCCGACAGCAGACGTTGTCTCGGCATCTCTC
GCTGCACACAGGTGAGTCCGAGCCCGCTCCCTCCTGCCGCGCCCTCTGGATCGCCGGCTT
CAACAAGCTGCCTTTTCTAAGAGACGTGTAGCTGGAATGGTGGGATCGTCTTTATCCTGA
CCTTTTCGAGCCATCTTCCCTGGCAGGTTCAAATAAGACTCTTGGAAAGGGTTTCGGTAT
TTGTGTTGAAAGGACCCATTGAGTTCAAGGAGGATTGATGAGAAAAGATACACGTGTGGG
TGTGTCCAGGTAAAATCGCTCAGCCCTGAGGAGTTTACTGCCCACATCTTGAGGGTGCAG
AGGGGCTGGGGCTGCACCCCATCTTATTGTCAGAGGTGGGAGCAGAGCGGGAAAGAGCCC
CTTGGTGGAGAAACAGTCTCTTGTCTTTATTTACATAGAATAGTAAAAAACATGGTTTGT
TCTGAGTGGTGGGAACTGGAAGAGCAAATAAATAGTAACTTAATCAATGCAGCAATAATA
ATCCAGGACAAAAGGAGTTAGGTCAAAGTGATATTAAATAAAGCAGAGTTCTCTCGTGGT
GCAGCAGGTTAAGGATCCTGTGTCGTCACTGCTGTGGTGTGAGTTTAATCTCTGACTCCA
GAACTTTCGCATGCTGTGGGCAAGTCCACACACACACACACACACACACACACACACACA
CAGTAAACAAAAAGAAAGATGGAAAGAAGAAAATGAAGTGTTTCAATTTTTACACTGTTA
AAAATTCAAAAGTGTCTTATTTACAGGAAACACAAAACAAAGTGAAAAAAAAAGGTTTTG
TATATCACACAAAATAAAAAAGAAGGCAAAAGACAAACAGTATTAGTATAAGATCAGTTT
TCTCTTTTTATGTATATATTTTTTTATATTTTGGGGAGCCATGTCCTT------------
------------------------------------------------------------
------------------------------------------------AATCTTAAATAT
TAAACCACTAAAGACAAAATTTAGTCATATACTTAGCCATGAAGAAAATTTTCACATGTT
CAAAAGAGTAGACGTTCTATAGGCCACATTCACTGAGCAAAATTAAATGAAATTTAGAAT
AACTGAGGATCACAAAATGGCCTACCTAACTGAATCAAAGAAAAGGAAGAAAATCTCAAA
TTCTAGACTTCCAGAAGGAATGTTAGGAGAACTTCATACAAAACCTGGAACAAACAGCTA
CAGCTCGGTCCAAGAAACATTTATAGACTTAAACGTTTTAATTAGAAG

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               1-153, gnl|bosTau2|chr17 (7888634-7888786)
               

               
               1-153, gnl|Hg17|chr4 (147058261-147058093)
               

               
               1-153, gnl|Mm7|chr8 (77716063-77716206)
               


               
               214-638, gnl|bosTau2|chr17 (7888963-7889394)
               

               
               214-638, gnl|Hg17|chr4 (147058036-147057583)
               


               
               784-1308, gnl|bosTau2|chr17 (7889391-7889901)
               

               
               784-1308, gnl|Hg17|chr4 (147057586-147056535)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-153, gnl|bosTau2|chr17 (7888634-7888786)
               

               
               1-153, gnl|Hg17|chr4 (147058261-147058093)
               

               
               1-153, gnl|Mm7|chr8 (77716063-77716206)
               


               
               214-638, gnl|bosTau2|chr17 (7888963-7889394)
               

               
               214-638, gnl|Hg17|chr4 (147058036-147057583)
               


               
               784-1308, gnl|bosTau2|chr17 (7889391-7889901)
               

               
               784-1308, gnl|Hg17|chr4 (147057586-147056535)

	1-153, gnl\|bosTau2\|chr17 (7888634-7888786)
	1-153, gnl\|Hg17\|chr4 (147058261-147058093)
	1-153, gnl\|Mm7\|chr8 (77716063-77716206)

	214-638, gnl\|bosTau2\|chr17 (7888963-7889394)
	214-638, gnl\|Hg17\|chr4 (147058036-147057583)

	784-1308, gnl\|bosTau2\|chr17 (7889391-7889901)
	784-1308, gnl\|Hg17\|chr4 (147057586-147056535)