Non-Coding RNA Search

Ss1.1-Pig4-TMW8032I14.3

Sequence:


               
               AAAACGCCATGTCCCCGAAAGGCCCTGCACTCGGCCAGCAGCCTGGAGAGTCACCGAGGG
ATGAGGACGCCACAGCCCGGGGGAGCGCCTTTTCTGCTCTCGCGTCCCACAGCGCGCAGC
GCCCAGGAGCCAGGCAGAGCCTGACGCCCTGTCATCTCCCTTGCGCACAGGACTCTGCCA
GTGATCCAGCAGGCCAGCTCCCTGCTGCATGGAGCGGCTGCAGAAGCAACCACTTACCTC
CCCTGGGAGCGTCAGCTCCTCCCGAGGCTCCAGTGTTCCCGGCTCTCCCTCCAGCATCGT
GGCGAAGATGGACAATCAGGTACTGGGCTACAAGGACTTGGCCGCCATCCCCAAGGACAA
GGCCATCCTGGACATCGAGAGGCCTGACCTCATGATCTACGAGCCCCACTTTACCTATTC
TCTCCTGGAACATGTGGAGCTGCCCAGAAGCCGGGAGCGCTCGCTGTCACCCAAATCCAC
ATCCCCCCCACCATCCCCAGAGGTGTGGGCGGAGAGCCGGTCCCCTGGAACCTTCCCTCA
GGCTTCAGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACGCCATGTCCCCGAAAGGCCCTGCACTCGGCCAGCAGCCTGGAGAGTCACCGAGGG
ATGAGGACGCCACAGCCCGGGGGAGCGCCTTTTCTGCTCTCGCGTCCCACAGCGCGCAGC
GCCCAGGAGCCAGGCAGAGCCTGACGCCCTGTCATCTCCCTTGCGCACAGGACTCTGCCA
GTGATCCAGCAGGCCAGCTCCCTGCTGCATGGAGCGGCTGCAGAAGCAACCACTTACCTC
CCCTGGGAGCGTCAGCTCCTCCCGAGGCTCCAGTGTTCCCGGCTCTCCCTCCAGCATCGT
GGCGAAGATGGACAATCAGGTACTGGGCTACAAGGACTTGGCCGCCATCCCCAAGGACAA
GGCCATCCTGGACATCGAGAGGCCTGACCTCATGATCTACGAGCCCCACTTTACCTATTC
TCTCCTGGAACATGTGGAGCTGCCCAGAAGCCGGGAGCGCTCGCTGTCACCCAAATCCAC
ATCCCCCCCACCATCCCCAGAGGTGTGGGCGGAGAGCCGGTCCCCTGGAACCTTCCCTCA
GGCTTCAGCCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               65-154, - strand, RNAz p=0.863627

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               65-154, - strand, RNAz p=0.863627

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               20-226, gnl|bosTau2|chr8 (31523598-31523390)
               

               
               20-226, gnl|hg17|chr8 (21980115-21980437)
               

               
               20-226, gnl|Hg17|chr8 (21980155-21980350)
               

               
               20-226, gnl|loxAfr1|scaffold_31885 (4923-5301)
               

               
               20-226, gnl|mm7|chr14 (65262933-65262637)
               

               
               20-226, gnl|Mm7|chr14 (65262894-65262723)
               

               
               20-226, gnl|monDom2|scaffold_1 (73598995-73598528)
               

               
               20-226, gnl|panTro1|chr7 (22912298-22912620)
               

               
               20-226, gnl|rheMac2|chr8 (21990301-21990623)
               

               
               20-226, gnl|rn3|chr15 (51036507-51036212)
               


               
               266-457, gnl|bosTau2|chr8 (31522366-31522176)
               

               
               266-457, gnl|Hg17|chr8 (21980950-21981139)
               

               
               266-457, gnl|Mm7|chr14 (65261957-65261769)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-226, gnl|bosTau2|chr8 (31523598-31523390)
               

               
               20-226, gnl|hg17|chr8 (21980115-21980437)
               

               
               20-226, gnl|Hg17|chr8 (21980155-21980350)
               

               
               20-226, gnl|loxAfr1|scaffold_31885 (4923-5301)
               

               
               20-226, gnl|mm7|chr14 (65262933-65262637)
               

               
               20-226, gnl|Mm7|chr14 (65262894-65262723)
               

               
               20-226, gnl|monDom2|scaffold_1 (73598995-73598528)
               

               
               20-226, gnl|panTro1|chr7 (22912298-22912620)
               

               
               20-226, gnl|rheMac2|chr8 (21990301-21990623)
               

               
               20-226, gnl|rn3|chr15 (51036507-51036212)
               


               
               266-457, gnl|bosTau2|chr8 (31522366-31522176)
               

               
               266-457, gnl|Hg17|chr8 (21980950-21981139)
               

               
               266-457, gnl|Mm7|chr14 (65261957-65261769)

	20-226, gnl\|bosTau2\|chr8 (31523598-31523390)
	20-226, gnl\|hg17\|chr8 (21980115-21980437)
	20-226, gnl\|Hg17\|chr8 (21980155-21980350)
	20-226, gnl\|loxAfr1\|scaffold_31885 (4923-5301)
	20-226, gnl\|mm7\|chr14 (65262933-65262637)
	20-226, gnl\|Mm7\|chr14 (65262894-65262723)
	20-226, gnl\|monDom2\|scaffold_1 (73598995-73598528)
	20-226, gnl\|panTro1\|chr7 (22912298-22912620)
	20-226, gnl\|rheMac2\|chr8 (21990301-21990623)
	20-226, gnl\|rn3\|chr15 (51036507-51036212)

	266-457, gnl\|bosTau2\|chr8 (31522366-31522176)
	266-457, gnl\|Hg17\|chr8 (21980950-21981139)
	266-457, gnl\|Mm7\|chr14 (65261957-65261769)