Non-Coding RNA Search

Ss1.1-Pig4-TMW8032J09.3

Sequence:


               
               TGAAATAATTGGAAGACACCTCATGTGATGAATCCCAGTGGGAGGTGCTGTGGCTGTGGC
TGACCCCAGAACATTTAACAGCTTTGTTGCCTGGAGTCGAGTGTGAAGAAATGTGCTAAA
GAACCATGAGTGGTGGTTTCTTTTTTTCATGCGTACCTTTCATTGGAAGATTCCCAGCAG
GAATTTGGATGGAAAACCCTGATTTCTGAGGTCTGCTGTGCATCACCTCATACAGCACAC
ATTTCACCCTCTTTCCACTCGGATTAAGACCTGAAAGCTTGGAGCAATGCCAGTCAGTCA
TCTGGTAAACCTCAGAATGGCGTCTCATCCTGGACATCATGCCTCAGAGTCCACACACCA
CAAGGACTCCATCAGTGCCCACCAAGCAGAGACTCGTGTCTGAATGCTGGGATGTGTTGC
CTTTTTATGGTAATTTGAGTCTGGAGGTCTCCCTTTTTTCTATCACTCTTGCTGTCCCAG
CTAATGGTAATTGCAGAGTCCTTCTCAGAGATAACCATTCAACCTGTGCTTCTGTTTTTT
GTTGTTTTTTTTTTTTTTAAATCATGCCTTAGGTAGGATTTTTAAGAGGTAGGCTCTGAG
AGAAGGATCTTCATGCAATAACTTATTAAGGAAGTGTCCCCTGGGCCCCCTAGGAAAGAC
ATGAGGGAGGAAAGACAGGGAAGGGAAGAAGCCAGGGAAGGGAGCCCTTTCAGGACAGGT
CCTGTGCAGAGGAGCTTCAGCCTGATCCCACAGCAGCGGCTCGTGAGGGTCAGTTATGCC
TCAGAGTTGTCCCAAACCGGGGCAAGGGAGCTGAGCTTTCATAGCCTTGCACCCAAAGAA
GATGTAAACTTCCTGCTTCCCATTCCTGCGGGCAAAATGGAGCCGTAGCTCAGGAGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAATAATTGGAAGACACCTCATGTGATGAATCCCAGTGGGAGGTGCTGTGGCTGTGGC
TGACCCCAGAACATTTAACAGCTTTGTTGCCTGGAGTCGAGTGTGAAGAAATGTGCTAAA
GAACCATGAGTGGTGGTTTCTTTTTTTCATGCGTACCTTTCATTGGAAGATTCCCAGCAG
GAATTTGGATGGAAAACCCTGATTTCTGAGGTCTGCTGTGCATCACCTCATACAGCACAC
ATTTCACCCTCTTTCCACTCGGATTAAGACCTGAAAGCTTGGAGCAATGCCAGTCAGTCA
TCTGGTAAACCTCAGAATGGCGTCTCATCCTGGACATCATGCCTCAGAGTCCACACACCA
CAAGGACTCCATCAGTGCCCACCAAGCAGAGACTCGTGTCTGAATGCTGGGATGTGTTGC
CTTTTTATGGTAATTTGAGTCTGGAGGTCTCCCTTTTTTCTATCACTCTTGCTGTCCCAG
CTAATGGTAATTGCAGAGTCCTTCTCAGAGATAACCATTCAACCTGTGCTTCTGTTTTTT
GTTGTTTTTTTTTTTTTTAAATCATGCCTTAGGTAGGATTTTTAAGAGGTAGGCTCTGAG
AGAAGGATCTTCATGCAATAACTTATTAAGGAAGTGTCCCCTGGGCCCCCTAGGAAAGAC
ATGAGGGAGGAAAGACAGGGAAGGGAAGAAGCCAGGGAAGGGAGCCCTTTCAGGACAGGT
CCTGTGCAGAGGAGCTTCAGCCTGATCCCACAGCAGCGGCTCGTGAGGGTCAGTTATGCC
TCAGAGTTGTCCCAAACCGGGGCAAGGGAGCTGAGCTTTCATAGCCTTGCACCCAAAGAA
GATGTAAACTTCCTGCTTCCCATTCCTGCGGGCAAAATGGAGCCGTAGCTCAGGAGCAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-309, + strand, RNAz p=0.754003

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-309, + strand, RNAz p=0.754003

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002207, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002207, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               48-550, gnl|bosTau2|chr22 (9163401-9162906)
               

               
               48-550, gnl|Hg17|chr3 (37836052-37836552)
               

               
               48-550, gnl|Mm7|chr9 (118578127-118578593)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-550, gnl|bosTau2|chr22 (9163401-9162906)
               

               
               48-550, gnl|Hg17|chr3 (37836052-37836552)
               

               
               48-550, gnl|Mm7|chr9 (118578127-118578593)

	48-550, gnl\|bosTau2\|chr22 (9163401-9162906)
	48-550, gnl\|Hg17\|chr3 (37836052-37836552)
	48-550, gnl\|Mm7\|chr9 (118578127-118578593)