Non-Coding RNA Search

Ss1.1-Pig4-TMW8032J10.5

Sequence:


               
               AATAATACAGGAACCTAAGAAAAAAAGATGTGCTTGAACCAAGATATTGCTAAGTAAATT
AAGAGTTTATTCTGTGCAGCCATTGCTCATGTTTGGACAGAAGGGTTATGGAGGAGAGGG
AAAAACTTTATGATTTTTCAAAAGCCGTCTTAGGGTAATAGTGATTTTTTTCCTCTGTAT
TTATTGCTTGTAAGTTTGATGATTTCATCTACCTTCTTAATTCTTCTGTTAAAGAACAAG
GCTTAATTAAGATATAGTCAGCATATGTTGATGTGGACATAAAATCTGTGCTTAGTTTGC
TGTAGGAAAGTTTTGGTTTCCCTTTTCTGTTTTTGTTATTGTTTTGAAGTCTTTTTTGGG
ACTTGGCTAAGGCTGTAGAGGGTTTTTTATCCTTTCTGTTTTTCTGAACTACATTAGCCA
TTCATAGAACAGAAGCAAATAGCCATTTTTAAAATTCATGTCTTCAAATGTTAATTTGAT
GCTTTGAGGCATAAATGACCTTTCTAGCCAGCCCAGACTTGTCAAACAAAGGAATGATAG
AAACAAGCTGCTGTTTGTTCTAATACAACAGGCTGTTTTTCACAGAGAATTTCAAAACAA
TTTTGCTTCCCTTCTTCTCCAAAACATTAAATTCAACTTCAGTCTGCTAGGTTTGAATTT
AGGAAGAATTGTATACACACAGTGGTTAAGTGGAATCCTGACCACCTGTGCAAAATGAAC
CATAGGCTTCAGCTTGTAGAATCTACAAATGTGTATAGTGCACGCCTGGCTTCTCAGGCT
GATATTGGGCTCAAACAAAGCCAAAGAGTTCCTAGAGTGTTGGAGCAGAGAAAGAGAAAG
GAAGATCGAAAATAGTAGGTGAGCAGAGTGAGCTCTTGCACATTGCTTTTTATTATTCTT
GTTGCAGATTAACTGAAACTAGAGAAATGAACTGAGGGAGTATTTTGGATTGGTTGCTGG
TCTTGGCACCAGAGGGGGTGTTTTCATCATACCTTCACAGCTGGCTTACTAATCTTGGCC
TCTGGTGTGTCATATAACCTTCATGAGTTTATCTGTCAAATGGGAATAATACTACTTGTC
CTGCTCTATTACCAACTCTGTACGAGGATATTTGTTGAGAGGCACCTGTTGAATGATGGA
TGTGTAAAACCCTGTTGCACATTTGTCTCAGTAATTATGTTAGCTTACCACCAGCTTATT
TTAGTTGTTGTCCAGTGATACTAAACTCTTCTTTTCCTGGACATGATGTAAATAAGTAGG
TCAAAGTTTTAATTTCGGTGGTTTTTCACTGGGTTGTCATGTTCTAAAATAAATGACCAG
GAAATCAGGAAGCCAACAACATGAAAAAGAGTCCACCTGTAAATATAAGCCGCCCCTTTG
TACCCAAACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAATACAGGAACCTAAGAAAAAAAGATGTGCTTGAACCAAGATATTGCTAAGTAAATT
AAGAGTTTATTCTGTGCAGCCATTGCTCATGTTTGGACAGAAGGGTTATGGAGGAGAGGG
AAAAACTTTATGATTTTTCAAAAGCCGTCTTAGGGTAATAGTGATTTTTTTCCTCTGTAT
TTATTGCTTGTAAGTTTGATGATTTCATCTACCTTCTTAATTCTTCTGTTAAAGAACAAG
GCTTAATTAAGATATAGTCAGCATATGTTGATGTGGACATAAAATCTGTGCTTAGTTTGC
TGTAGGAAAGTTTTGGTTTCCCTTTTCTGTTTTTGTTATTGTTTTGAAGTCTTTTTTGGG
ACTTGGCTAAGGCTGTAGAGGGTTTTTTATCCTTTCTGTTTTTCTGAACTACATTAGCCA
TTCATAGAACAGAAGCAAATAGCCATTTTTAAAATTCATGTCTTCAAATGTTAATTTGAT
GCTTTGAGGCATAAATGACCTTTCTAGCCAGCCCAGACTTGTCAAACAAAGGAATGATAG
AAACAAGCTGCTGTTTGTTCTAATACAACAGGCTGTTTTTCACAGAGAATTTCAAAACAA
TTTTGCTTCCCTTCTTCTCCAAAACATTAAATTCAACTTCAGTCTGCTAGGTTTGAATTT
AGGAAGAATTGTATACACACAGTGGTTAAGTGGAATCCTGACCACCTGTGCAAAATGAAC
CATAGGCTTCAGCTTGTAGAATCTACAAATGTGTATAGTGCACGCCTGGCTTCTCAGGCT
GATATTGGGCTCAAACAAAGCCAAAGAGTTCCTAGAGTGTTGGAGCAGAGAAAGAGAAAG
GAAGATCGAAAATAGTAGGTGAGCAGAGTGAGCTCTTGCACATTGCTTTTTATTATTCTT
GTTGCAGATTAACTGAAACTAGAGAAATGAACTGAGGGAGTATTTTGGATTGGTTGCTGG
TCTTGGCACCAGAGGGGGTGTTTTCATCATACCTTCACAGCTGGCTTACTAATCTTGGCC
TCTGGTGTGTCATATAACCTTCATGAGTTTATCTGTCAAATGGGAATAATACTACTTGTC
CTGCTCTATTACCAACTCTGTACGAGGATATTTGTTGAGAGGCACCTGTTGAATGATGGA
TGTGTAAAACCCTGTTGCACATTTGTCTCAGTAATTATGTTAGCTTACCACCAGCTTATT
TTAGTTGTTGTCCAGTGATACTAAACTCTTCTTTTCCTGGACATGATGTAAATAAGTAGG
TCAAAGTTTTAATTTCGGTGGTTTTTCACTGGGTTGTCATGTTCTAAAATAAATGACCAG
GAAATCAGGAAGCCAACAACATGAAAAAGAGTCCACCTGTAAATATAAGCCGCCCCTTTG
TACCCAAACCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               343-577, + strand, RNAz p=0.78293

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               343-577, + strand, RNAz p=0.78293

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               67-1392, gnl|bosTau2|chr20 (10078445-10077124)
               

               
               67-1392, gnl|Hg17|chr5 (60763350-60764491)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-1392, gnl|bosTau2|chr20 (10078445-10077124)
               

               
               67-1392, gnl|Hg17|chr5 (60763350-60764491)

	67-1392, gnl\|bosTau2\|chr20 (10078445-10077124)
	67-1392, gnl\|Hg17\|chr5 (60763350-60764491)