Ss1.1-Pig4-TMW8032L10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGCCTCCTTGGGCGGTGTGGCGCCGTCAAGGACCAAGCCATCCTCCAAGCTTTCTTCC TGCATTGCTGCAATTGCAGCGCTTAGCGCTAAAAAGGCTGCTTCTGACTCCTCTAAAGAA CCAGTGACCAATTCCCGGGAGTCCTCACCATTACCAAAAGAAGTAAATGACAGCCCAAGA GCCATCGAAAAGTCTCCTGAATCCCAGAGTCTCATTGATGGGACGAAAAAAGTGTCCCTC AAGCAGCCGGATAGTCCCAGGAGCATTTCCAGTGAAAACAGTAGCAAGGGATCGCCCTCC TCTCCTGCAGGGTCAACACCAGCAATTCCCAAAGTCCGCATCAAAACCATCAAAACGTCT TCTGGGGAAATCAAGAGAACCGTGACGAGGGTGTTGCCTGAAGTCGATCTCGATGCCGGT AAAAAGCCTTCTGAGCAGACGGGGTCCATGGTGGCATCCGTGACATCACTTCTGTCGTCT CCGACCTCGGCCGCCGTTCTTTCCTCCCCACCCAGGGCACCTCTGCAGTCAGCGGTCGTC ACCAACGCAGTGGCCCCTGCTGAGCTGACCCCCAAACAGGTTACCATCAAGCCTGTGGCA ACCGCCTTCCTCCCGGTGTCAGCTGTGAAGACAGCCGGATCTCAAGTCATCAATTTGAAG CTCGCCAACAACACGACGGTCAAAGCCACGGTCATATCTGCTGCCTCGGTTCAGAGTGCC AGCAGTGCCATCATTAAAGCTGCCAACGCCATCCAGCAGCAGACTGTCGTGGTGCCGGCC TCCAGCCTGGCCAACGCCAAACTCGTGCCAAAGACTGTGCACCTCGCCAACCTCAACCTT CTGCCTCAGGGCGCCCAGGCCACTTCCGAGCTCCGCCAAGTGCTCACCAAACCTCAGCAG CAAATAAAGCAGGCAATAATCAATGCCGCGGCCTCGCAGCCACCCAAAAAGGTGTCGCGG GTCCAGGTGGTGTCCTCCCTGCAGAGTTCTGTGGTGGAAGCTTTCAACAAGGTGCTGAGC AGCGTCAACCCAGTCCCAGTTTACATCCCCAACCTCAGTCCCCCTGCCAACGCGGGCATC ACGCTCCCGACCCGCGGCTACAAGTGCTTGGAGTGTGGGGACTCCTTCGCCCTTGAAAAG AGCCTGACCCAGCACTACGACAGACGCAGCGTGCGCATCGAAGTGACCTGCAACCACTGT ACCAAGAACCTGGTGTTTTACAACAAGTGCAGTCTCCTGTCCCATGCCCGTGGGCACAAG GAGAAGGGGGTGGTGATGCAGTGCTCCCACTTGATTTTGAAGCCAGTCCCGGCAGACCAG ATGATCGTTTCTCCGTCAAGCAATACTCCTGCTTCATCTTCCACTCTGCCAAGCTCCGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGCCTCCTTGGGCGGTGTGGCGCCGTCAAGGACCAAGCCATCCTCCAAGCTTTCTTCC TGCATTGCTGCAATTGCAGCGCTTAGCGCTAAAAAGGCTGCTTCTGACTCCTCTAAAGAA CCAGTGACCAATTCCCGGGAGTCCTCACCATTACCAAAAGAAGTAAATGACAGCCCAAGA GCCATCGAAAAGTCTCCTGAATCCCAGAGTCTCATTGATGGGACGAAAAAAGTGTCCCTC AAGCAGCCGGATAGTCCCAGGAGCATTTCCAGTGAAAACAGTAGCAAGGGATCGCCCTCC TCTCCTGCAGGGTCAACACCAGCAATTCCCAAAGTCCGCATCAAAACCATCAAAACGTCT TCTGGGGAAATCAAGAGAACCGTGACGAGGGTGTTGCCTGAAGTCGATCTCGATGCCGGT AAAAAGCCTTCTGAGCAGACGGGGTCCATGGTGGCATCCGTGACATCACTTCTGTCGTCT CCGACCTCGGCCGCCGTTCTTTCCTCCCCACCCAGGGCACCTCTGCAGTCAGCGGTCGTC ACCAACGCAGTGGCCCCTGCTGAGCTGACCCCCAAACAGGTTACCATCAAGCCTGTGGCA ACCGCCTTCCTCCCGGTGTCAGCTGTGAAGACAGCCGGATCTCAAGTCATCAATTTGAAG CTCGCCAACAACACGACGGTCAAAGCCACGGTCATATCTGCTGCCTCGGTTCAGAGTGCC AGCAGTGCCATCATTAAAGCTGCCAACGCCATCCAGCAGCAGACTGTCGTGGTGCCGGCC TCCAGCCTGGCCAACGCCAAACTCGTGCCAAAGACTGTGCACCTCGCCAACCTCAACCTT CTGCCTCAGGGCGCCCAGGCCACTTCCGAGCTCCGCCAAGTGCTCACCAAACCTCAGCAG CAAATAAAGCAGGCAATAATCAATGCCGCGGCCTCGCAGCCACCCAAAAAGGTGTCGCGG GTCCAGGTGGTGTCCTCCCTGCAGAGTTCTGTGGTGGAAGCTTTCAACAAGGTGCTGAGC AGCGTCAACCCAGTCCCAGTTTACATCCCCAACCTCAGTCCCCCTGCCAACGCGGGCATC ACGCTCCCGACCCGCGGCTACAAGTGCTTGGAGTGTGGGGACTCCTTCGCCCTTGAAAAG AGCCTGACCCAGCACTACGACAGACGCAGCGTGCGCATCGAAGTGACCTGCAACCACTGT ACCAAGAACCTGGTGTTTTACAACAAGTGCAGTCTCCTGTCCCATGCCCGTGGGCACAAG GAGAAGGGGGTGGTGATGCAGTGCTCCCACTTGATTTTGAAGCCAGTCCCGGCAGACCAG ATGATCGTTTCTCCGTCAAGCAATACTCCTGCTTCATCTTCCACTCTGCCAAGCTCCGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 660-899, - strand, RNAz p=0.922036 | |
| 1180-1299, - strand, RNAz p=0.762677 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 660-899, - strand, RNAz p=0.922036 | |
| 1180-1299, - strand, RNAz p=0.762677 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 21-1378, gnl|bosTau2|chr24 (41774975-41776332) | |
| 21-1378, gnl|Hg17|chr18 (54737267-54738624) | |
| 21-1378, gnl|Mm7|chr18 (66012834-66014185) | |
| 239-401, gnl|bosTau2|chr21 (12796515-12796677) | |
| 239-401, gnl|canFam2|chr3 (56897156-56897685) | |
| 239-401, gnl|danRer3|chrUn (51958267-51957760) | |
| 239-401, gnl|dasNov1|scaffold_38846 (1398-1785) | |
| 239-401, gnl|echTel1|scaffold_323129 (35525-36054) | |
| 239-401, gnl|fr1|chrUn (200546958-200546478) | |
| 239-401, gnl|galGal2|chr10 (1689502-1688973) | |
| 239-401, gnl|hg17|chr15 (83127607-83128136) | |
| 239-401, gnl|Hg17|chr15 (83127938-83128100) | |
| 239-401, gnl|loxAfr1|scaffold_4941 (51139-51670) | |
| 239-401, gnl|mm7|chr7 (76895423-76895952) | |
| 239-401, gnl|Mm7|chr7 (76895754-76895916) | |
| 239-401, gnl|monDom2|scaffold_45 (761712-762244) | |
| 239-401, gnl|oryCun1|scaffold_138373 (4842-4313) | |
| 239-401, gnl|panTro1|chr16 (83932814-83933343) | |
| 239-401, gnl|rheMac2|chr7 (64515643-64515114) | |
| 239-401, gnl|rn3|chr1 (137281539-137282056) | |
| 239-401, gnl|tetNig1|chr13 (2194093-2193633) | |
| 239-401, gnl|xenTro1|scaffold_62 (2042614-2042071) | |
| 995-1331, gnl|bosTau2|chr21 (12797154-12797490) | |
| 995-1331, gnl|Hg17|chr15 (83128565-83128901) | |
| 995-1331, gnl|Mm7|chr7 (76896387-76896723) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 21-1378, gnl|bosTau2|chr24 (41774975-41776332) | |
| 21-1378, gnl|Hg17|chr18 (54737267-54738624) | |
| 21-1378, gnl|Mm7|chr18 (66012834-66014185) | |
| 239-401, gnl|bosTau2|chr21 (12796515-12796677) | |
| 239-401, gnl|canFam2|chr3 (56897156-56897685) | |
| 239-401, gnl|danRer3|chrUn (51958267-51957760) | |
| 239-401, gnl|dasNov1|scaffold_38846 (1398-1785) | |
| 239-401, gnl|echTel1|scaffold_323129 (35525-36054) | |
| 239-401, gnl|fr1|chrUn (200546958-200546478) | |
| 239-401, gnl|galGal2|chr10 (1689502-1688973) | |
| 239-401, gnl|hg17|chr15 (83127607-83128136) | |
| 239-401, gnl|Hg17|chr15 (83127938-83128100) | |
| 239-401, gnl|loxAfr1|scaffold_4941 (51139-51670) | |
| 239-401, gnl|mm7|chr7 (76895423-76895952) | |
| 239-401, gnl|Mm7|chr7 (76895754-76895916) | |
| 239-401, gnl|monDom2|scaffold_45 (761712-762244) | |
| 239-401, gnl|oryCun1|scaffold_138373 (4842-4313) | |
| 239-401, gnl|panTro1|chr16 (83932814-83933343) | |
| 239-401, gnl|rheMac2|chr7 (64515643-64515114) | |
| 239-401, gnl|rn3|chr1 (137281539-137282056) | |
| 239-401, gnl|tetNig1|chr13 (2194093-2193633) | |
| 239-401, gnl|xenTro1|scaffold_62 (2042614-2042071) | |
| 995-1331, gnl|bosTau2|chr21 (12797154-12797490) | |
| 995-1331, gnl|Hg17|chr15 (83128565-83128901) | |
| 995-1331, gnl|Mm7|chr7 (76896387-76896723) |