Non-Coding RNA Search

Ss1.1-Pig4-TMW8032M14.3

Sequence:


               
               GTTTTTTGGGTTTTTTTTTTTTGAAATCCGTAAGAGAAGGAGCTGTGTTTTAAAGTTATG
TTTATATATCTACAGTGATTACTATAGAGCATGTATGGTTGACACAAATGTTTGTGCAGT
AAATTAATTGATTATTGTTTATATCTTACTAGTGCATCTTGTAATAGGTAACCTCAAATT
AAATGCACTTATGTTATCCCTTTGTGAAAATTTGCTCTCTGTTGCGTGTGTTTATGGGTC
ATAATATATACAAACACATTTATGGGTCATAATGTATACAAACACAGGTTTAAATGTGCA
TTTTAAAAGAAAGACCATATTATATGCAAGTTTTATTATAAACTAGAACCTAAGTTTAAT
AGCTGCTCTGTATTTTGTACAGCTCTGAAATGTGAAGCTTTTCCATGTAATCTCATGCCA
ATGTTGACCCATGTGGTTTAAAATAGCCCTATTTTAATCTCTGACCAAATTTGGAATTAG
AATATCTATCCAGTGGGGATTTGTAAATTATTGTAGTTTGTAGTGTGATAGGTTTGTATA
AATAATTGCAATGATTCCCACTGTGTATTTTAAGTTAAAATATACTCAAATAGACAATGT
AATAAGTATGATTTTTTATTGTTTGATATTTTAAGTTATATCTTTTTAAAAGGATCATCA
AAACTGATTTGATAAAAAGTACTTTATTTCTCCTGATGTATAGCACAGGGAACTACATTT
AGTCACTTGTAATGGAACATGATGGAGGATAATATGAGAAAAAGAATGTGTGTGATTGTG
CATGTGTGTGTATGACTGAGTCATTTTGCTCTGCAGCAGAAATTGATGTAAAGTTGTAAA
GCAACTATAATAGAAAAAATAGTCTTTTAAAAAATACTTTATTTCATCAGTCTAAAATAT
CTACCTGTGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTGGGTTTTTTTTTTTTGAAATCCGTAAGAGAAGGAGCTGTGTTTTAAAGTTATG
TTTATATATCTACAGTGATTACTATAGAGCATGTATGGTTGACACAAATGTTTGTGCAGT
AAATTAATTGATTATTGTTTATATCTTACTAGTGCATCTTGTAATAGGTAACCTCAAATT
AAATGCACTTATGTTATCCCTTTGTGAAAATTTGCTCTCTGTTGCGTGTGTTTATGGGTC
ATAATATATACAAACACATTTATGGGTCATAATGTATACAAACACAGGTTTAAATGTGCA
TTTTAAAAGAAAGACCATATTATATGCAAGTTTTATTATAAACTAGAACCTAAGTTTAAT
AGCTGCTCTGTATTTTGTACAGCTCTGAAATGTGAAGCTTTTCCATGTAATCTCATGCCA
ATGTTGACCCATGTGGTTTAAAATAGCCCTATTTTAATCTCTGACCAAATTTGGAATTAG
AATATCTATCCAGTGGGGATTTGTAAATTATTGTAGTTTGTAGTGTGATAGGTTTGTATA
AATAATTGCAATGATTCCCACTGTGTATTTTAAGTTAAAATATACTCAAATAGACAATGT
AATAAGTATGATTTTTTATTGTTTGATATTTTAAGTTATATCTTTTTAAAAGGATCATCA
AAACTGATTTGATAAAAAGTACTTTATTTCTCCTGATGTATAGCACAGGGAACTACATTT
AGTCACTTGTAATGGAACATGATGGAGGATAATATGAGAAAAAGAATGTGTGTGATTGTG
CATGTGTGTGTATGACTGAGTCATTTTGCTCTGCAGCAGAAATTGATGTAAAGTTGTAAA
GCAACTATAATAGAAAAAATAGTCTTTTAAAAAATACTTTATTTCATCAGTCTAAAATAT
CTACCTGTGACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               455-574, + strand, RNAz p=0.782743

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               455-574, + strand, RNAz p=0.782743

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               480-576, + strand, RNAmicro p=0.999765

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               480-576, + strand, RNAmicro p=0.999765

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-258, gnl|bosTau2|chr24 (25451239-25451495)
               

               
               2-258, gnl|Hg17|chr18 (16884941-16884677)
               

               
               2-258, gnl|Mm7|chr18 (10353353-10353100)
               


               
               259-688, gnl|bosTau2|chr24 (25451468-25451902)
               

               
               259-688, gnl|Hg17|chr18 (16884706-16884214)
               


               
               691-873, gnl|bosTau2|chr9 (34265081-34264899)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-258, gnl|bosTau2|chr24 (25451239-25451495)
               

               
               2-258, gnl|Hg17|chr18 (16884941-16884677)
               

               
               2-258, gnl|Mm7|chr18 (10353353-10353100)
               


               
               259-688, gnl|bosTau2|chr24 (25451468-25451902)
               

               
               259-688, gnl|Hg17|chr18 (16884706-16884214)
               


               
               691-873, gnl|bosTau2|chr9 (34265081-34264899)

	2-258, gnl\|bosTau2\|chr24 (25451239-25451495)
	2-258, gnl\|Hg17\|chr18 (16884941-16884677)
	2-258, gnl\|Mm7\|chr18 (10353353-10353100)

	259-688, gnl\|bosTau2\|chr24 (25451468-25451902)
	259-688, gnl\|Hg17\|chr18 (16884706-16884214)

	691-873, gnl\|bosTau2\|chr9 (34265081-34264899)