Non-Coding RNA Search

Ss1.1-Pig4-TMW8032M20.3

Sequence:


               
               TTTAATATAGTATTCCATGCTATGTGGATGTAGTATAGTTTATTTAATAATTCCCTAGAA
GTTTCACCCATTCACATTTGGCTGTTATAAATAATGCTGTGATAACTATATCCTTAGAGT
TATGTGATCCATGGTTATTTCCTTAGGATGAAATCCCCAAATTGCTGCGTCAGGTATATT
ATTGTACAGTTTTTCCAAGCTATCCTTATAGGTATCGCGTGTTTACAAGGCAATTTTTAA
TAGAATTTACTTCTAGGTAAGTACATTATGTTTTACTGTGTTAATGTGGACCATCTAAAT
ACTAAACTGTTTTTATAGGCATGTATCTTCCCGTATAAAAGATATAAAAGCTTTGTATTG
AACCTAAGTCTTTTCTGGATTTTCTGCCATATGTGTTTCAGAGCCCTGTTCGATTTGATA
CCTTTGATAGCCTTTCACTAAGTATTCCAGCTGCCACATGGGTATGTACTGATCTGTGAT
CTATTTGGGGTCTGTTTCGGAGACATTTTTGAATCTGCAAGGGCTTGAAGGACTTTGTGT
AGCTCAGGTACTACACGTTACTCAGACTCGTGGTGGGTTGCACCCATCTGTTTTAATCAG
TGGTACCATGGCCTAGTTTGCGGGGAGAAGAAGGTGGGCGGTTTCTCTCTTGCTGCAGAA
ATTTTGGCTGTTTTGAACACACACACACCAAATCTCAAATTCAAAGATATATAAAAGAGT
GTGGACGCCCATAATTCTCTGCAGCGTTATGTCCTTATACCCTTGAATAGCAGTAGTCTG
TAGTAGCAAGTCTAGAGTGCTTTGAGCTCCATGTTTGTTCAGGAAACACCCACTGGTGTC
TATGACGCTCTGTAGCCTACCTAGGCAGAGAAAGCTTGGGAGGCTCATTGTCAATGGTGT
CAGAACAGCTGTCCTTGCATTGTAACCATGAATGTTCTCCCTATGCTGTAGGGTCATCCA
CTGACCCTGGACCACTGCCTTCACCACTTCATCTCGTCGGAATCAGTGCGAGATGTCGTA
TGTGACAACTGTACGAAGGTATGGCTTCAACCCCAAGTGCCATCTCCAGACCTGGCCCAC
GTGTCCTGAAATAGCGCCTCTCACACCCTGACCCCGAGCGCTCCTGACCATATCCAGAGG
CTCCCTGCAGCCACAGCCATTTCCACCTAACTGGGTTAGGAAATTGGCAGCCCACAGACC
CAATCTTTTTCCCAGATGGGTTTTGTTTTATCCAAAAAATATTTAAAGGACAGATCTGAA
TTCGGTGCTTGGAGGTAGGACATGCCCGCTCCAGTTTGCCACAGTCCCCTCCATGCCCAC
CTGTCTCACACCTGCCTTAGCTGAACTACCTTCCCACTTCTCTGAGCAATTGAATTTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAATATAGTATTCCATGCTATGTGGATGTAGTATAGTTTATTTAATAATTCCCTAGAA
GTTTCACCCATTCACATTTGGCTGTTATAAATAATGCTGTGATAACTATATCCTTAGAGT
TATGTGATCCATGGTTATTTCCTTAGGATGAAATCCCCAAATTGCTGCGTCAGGTATATT
ATTGTACAGTTTTTCCAAGCTATCCTTATAGGTATCGCGTGTTTACAAGGCAATTTTTAA
TAGAATTTACTTCTAGGTAAGTACATTATGTTTTACTGTGTTAATGTGGACCATCTAAAT
ACTAAACTGTTTTTATAGGCATGTATCTTCCCGTATAAAAGATATAAAAGCTTTGTATTG
AACCTAAGTCTTTTCTGGATTTTCTGCCATATGTGTTTCAGAGCCCTGTTCGATTTGATA
CCTTTGATAGCCTTTCACTAAGTATTCCAGCTGCCACATGGGTATGTACTGATCTGTGAT
CTATTTGGGGTCTGTTTCGGAGACATTTTTGAATCTGCAAGGGCTTGAAGGACTTTGTGT
AGCTCAGGTACTACACGTTACTCAGACTCGTGGTGGGTTGCACCCATCTGTTTTAATCAG
TGGTACCATGGCCTAGTTTGCGGGGAGAAGAAGGTGGGCGGTTTCTCTCTTGCTGCAGAA
ATTTTGGCTGTTTTGAACACACACACACCAAATCTCAAATTCAAAGATATATAAAAGAGT
GTGGACGCCCATAATTCTCTGCAGCGTTATGTCCTTATACCCTTGAATAGCAGTAGTCTG
TAGTAGCAAGTCTAGAGTGCTTTGAGCTCCATGTTTGTTCAGGAAACACCCACTGGTGTC
TATGACGCTCTGTAGCCTACCTAGGCAGAGAAAGCTTGGGAGGCTCATTGTCAATGGTGT
CAGAACAGCTGTCCTTGCATTGTAACCATGAATGTTCTCCCTATGCTGTAGGGTCATCCA
CTGACCCTGGACCACTGCCTTCACCACTTCATCTCGTCGGAATCAGTGCGAGATGTCGTA
TGTGACAACTGTACGAAGGTATGGCTTCAACCCCAAGTGCCATCTCCAGACCTGGCCCAC
GTGTCCTGAAATAGCGCCTCTCACACCCTGACCCCGAGCGCTCCTGACCATATCCAGAGG
CTCCCTGCAGCCACAGCCATTTCCACCTAACTGGGTTAGGAAATTGGCAGCCCACAGACC
CAATCTTTTTCCCAGATGGGTTTTGTTTTATCCAAAAAATATTTAAAGGACAGATCTGAA
TTCGGTGCTTGGAGGTAGGACATGCCCGCTCCAGTTTGCCACAGTCCCCTCCATGCCCAC
CTGTCTCACACCTGCCTTAGCTGAACTACCTTCCCACTTCTCTGAGCAATTGAATTTCAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               40-159, - strand, RNAz p=0.985822
               

               
               884-995, - strand, RNAz p=0.990863

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.985822
               

               
               884-995, - strand, RNAz p=0.990863

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-1336, gnl|bosTau2|chr17 (35255846-35257140)
               

               
               1-1336, gnl|Hg17|chr12 (107981544-107982854)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1336, gnl|bosTau2|chr17 (35255846-35257140)
               

               
               1-1336, gnl|Hg17|chr12 (107981544-107982854)

	40-159, - strand, RNAz p=0.985822
	884-995, - strand, RNAz p=0.990863

	1-1336, gnl\|bosTau2\|chr17 (35255846-35257140)
	1-1336, gnl\|Hg17\|chr12 (107981544-107982854)