Non-Coding RNA Search

Ss1.1-Pig4-TMW8032O17.3

Sequence:


               
               CTGTCTGTTAGCATCCCTTATAGATCATAAAGGCCTTTTTGGGGGGGAAGACCTGGAGCA
GTGATCCTTCAGATTGCTGTGTCAGAGCAGTGGCTCCTCTTTTATGCTTTTTCAATTCAG
CATATTAACCACGAGGAGCCCGGTACTACTTCCCCACATCCCGTTGTACCAAGATTTTAT
GATCCTATAACCCAGTAGGTTTTACTCATACAAACTTCTATCTATGTAAATTTTTAAAAT
GGGAACGGCTTCTAAAGACCCTTCCCCATGTTGGAGAGTTATGTATATTTCTAATAAGTA
TTAAAGAGAAGCTGTTTCTCCTGCCAAAATGACGCTGAAGGATTCACATTTGGTAGATTT
GACCAAGTTGGACTCCAGATGGTTAATAGTTTATTCCCTTTCCCTGGATTTTTTTTAGCT
CATCTTGACGCAGGTGAGTCTATCCAGATCTTTAAAGTCGCTAGTGTGCCCTGAGGTGAT
GAGGGCACACCGTCGAATGTTGATTCCAAAATGTCCTGAGATAGGGATAGGGCAGTGGGG
AAGTCAGGGAAGGGTGAGAAGCACAGTAGAGATTATTTATTTAAGAAAGAAAAGAACATT
AATGTCGTAGCATGGATCCGGTACGTTGTCATAATCCCATGAGGATTTTTGGATGACACG
ATCCCCTCAAATCAGTCACCATGTTGGGTAATGACTTCGTTCTTGCTGATCTTGTCTATG
TGTCATTGTAAATATTTGTGTGTCCATGTTCCATTTTGGCTACTGGATGGCCAAGTCATG
TAAGAAGATTTAACTCAAGTATTTATTCTTTAATTGTGTTATCCAGATTTCTTTCAGGCT
TGTGAATTGCACCCCAATGTTTGAGTTTAACCACCTGATCCCCACATCGTTCCCTCCCCT
GTGAAGCACATTCCATGGCTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCTGTTAGCATCCCTTATAGATCATAAAGGCCTTTTTGGGGGGGAAGACCTGGAGCA
GTGATCCTTCAGATTGCTGTGTCAGAGCAGTGGCTCCTCTTTTATGCTTTTTCAATTCAG
CATATTAACCACGAGGAGCCCGGTACTACTTCCCCACATCCCGTTGTACCAAGATTTTAT
GATCCTATAACCCAGTAGGTTTTACTCATACAAACTTCTATCTATGTAAATTTTTAAAAT
GGGAACGGCTTCTAAAGACCCTTCCCCATGTTGGAGAGTTATGTATATTTCTAATAAGTA
TTAAAGAGAAGCTGTTTCTCCTGCCAAAATGACGCTGAAGGATTCACATTTGGTAGATTT
GACCAAGTTGGACTCCAGATGGTTAATAGTTTATTCCCTTTCCCTGGATTTTTTTTAGCT
CATCTTGACGCAGGTGAGTCTATCCAGATCTTTAAAGTCGCTAGTGTGCCCTGAGGTGAT
GAGGGCACACCGTCGAATGTTGATTCCAAAATGTCCTGAGATAGGGATAGGGCAGTGGGG
AAGTCAGGGAAGGGTGAGAAGCACAGTAGAGATTATTTATTTAAGAAAGAAAAGAACATT
AATGTCGTAGCATGGATCCGGTACGTTGTCATAATCCCATGAGGATTTTTGGATGACACG
ATCCCCTCAAATCAGTCACCATGTTGGGTAATGACTTCGTTCTTGCTGATCTTGTCTATG
TGTCATTGTAAATATTTGTGTGTCCATGTTCCATTTTGGCTACTGGATGGCCAAGTCATG
TAAGAAGATTTAACTCAAGTATTTATTCTTTAATTGTGTTATCCAGATTTCTTTCAGGCT
TGTGAATTGCACCCCAATGTTTGAGTTTAACCACCTGATCCCCACATCGTTCCCTCCCCT
GTGAAGCACATTCCATGGCTAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               44-190, - strand, RNAz p=0.991328
               

               
               231-350, - strand, RNAz p=0.725111
               

               
               391-704, - strand, RNAz p=0.999507

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-190, - strand, RNAz p=0.991328
               

               
               231-350, - strand, RNAz p=0.725111
               

               
               391-704, - strand, RNAz p=0.999507

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               652-776, + strand, RNAmicro p=0.92535

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               652-776, + strand, RNAmicro p=0.92535

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-924, gnl|bosTau2|chrX (19383918-19384824)
               

               
               2-924, gnl|Hg17|chrX (110272099-110273021)
               

               
               2-924, gnl|Mm7|chrX (138457837-138458802)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-924, gnl|bosTau2|chrX (19383918-19384824)
               

               
               2-924, gnl|Hg17|chrX (110272099-110273021)
               

               
               2-924, gnl|Mm7|chrX (138457837-138458802)

	44-190, - strand, RNAz p=0.991328
	231-350, - strand, RNAz p=0.725111
	391-704, - strand, RNAz p=0.999507

	2-924, gnl\|bosTau2\|chrX (19383918-19384824)
	2-924, gnl\|Hg17\|chrX (110272099-110273021)
	2-924, gnl\|Mm7\|chrX (138457837-138458802)