Ss1.1-Pig4-TMW8033A08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTGACGACAAGGGCGACGGCTCCTGCGACGTGCGCTACTGGCCGCAGGAGGCCGGCGAG TACGCGGTGCACGTGCTGTGCAACAGCGAGGACATCCGCCTCAGCCCCTTCATGGCCGAC ATCCGCGAGGCGCCCCCCGACTTCCATCCCGACAGGGTGAAGGCACGCGGGCCCGGCTTG GAGAAGACGGGCGTGGCCGTCAACAAGCCCGCCGAGTTCACGGTGGACGCCAAGCACGGC GGGAAGGCTCCTCTCAGGGTCCAAGTCCAGGACAATGAGGGCTGCCCCGTGGAGGCCTCG GTCAAGGACAACGGCAACGGCACTTACAGCTGCTCCTACGTGCCCCGGAAGCCAGTGAAG CACACGGCCATGGTGTCCTGGGGAGGCGTCAGCATCCCCAACAGCCCCTTCCGGGTGAAC GTGGGAGCTGGCAGCCATCCAAACAAGGTCAAGGTGTACGGCCCGGGCGTGGCCAAGACG GGGCTCAAGGCTCACGAGCCCACATACTTCACTGTGGACTGCACAGAGGCCGGCCAGGGT GACGTCAGCATCGGCATCAAGTGTGCCCCTGGCGTGGTGGGCCCCACCGAGGCTGACATC GACTTCGACATCATCCGCAACGACAATGACACCTTCACAGTCAAGTACACGCCGCGGGGT GCTGGCAGCTACACCATCATGGTCCTCTTTGCTGACCAGGCCACGCCCACCAGCCCCATC CGGGTCAAGGTGGAGCCCTCCCACGATGCCAGCAAAGTGAAGGCCGAGGGCCCTGGCCTC AGTCGCACGGGTGTCGAGCTCGGCAAACCCACCCACTTCACGGTCAACGCCAAAGCTGCC GGCAAAGGCAAACTGGATGTCCAGTTTTCGGGGCCGGCGAAGGGGGACGCGGTGCGCGAC GTGGATGTCATCGACCACCACGACAACACTTACACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTGACGACAAGGGCGACGGCTCCTGCGACGTGCGCTACTGGCCGCAGGAGGCCGGCGAG TACGCGGTGCACGTGCTGTGCAACAGCGAGGACATCCGCCTCAGCCCCTTCATGGCCGAC ATCCGCGAGGCGCCCCCCGACTTCCATCCCGACAGGGTGAAGGCACGCGGGCCCGGCTTG GAGAAGACGGGCGTGGCCGTCAACAAGCCCGCCGAGTTCACGGTGGACGCCAAGCACGGC GGGAAGGCTCCTCTCAGGGTCCAAGTCCAGGACAATGAGGGCTGCCCCGTGGAGGCCTCG GTCAAGGACAACGGCAACGGCACTTACAGCTGCTCCTACGTGCCCCGGAAGCCAGTGAAG CACACGGCCATGGTGTCCTGGGGAGGCGTCAGCATCCCCAACAGCCCCTTCCGGGTGAAC GTGGGAGCTGGCAGCCATCCAAACAAGGTCAAGGTGTACGGCCCGGGCGTGGCCAAGACG GGGCTCAAGGCTCACGAGCCCACATACTTCACTGTGGACTGCACAGAGGCCGGCCAGGGT GACGTCAGCATCGGCATCAAGTGTGCCCCTGGCGTGGTGGGCCCCACCGAGGCTGACATC GACTTCGACATCATCCGCAACGACAATGACACCTTCACAGTCAAGTACACGCCGCGGGGT GCTGGCAGCTACACCATCATGGTCCTCTTTGCTGACCAGGCCACGCCCACCAGCCCCATC CGGGTCAAGGTGGAGCCCTCCCACGATGCCAGCAAAGTGAAGGCCGAGGGCCCTGGCCTC AGTCGCACGGGTGTCGAGCTCGGCAAACCCACCCACTTCACGGTCAACGCCAAAGCTGCC GGCAAAGGCAAACTGGATGTCCAGTTTTCGGGGCCGGCGAAGGGGGACGCGGTGCGCGAC GTGGATGTCATCGACCACCACGACAACACTTACACC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 578-700, - strand, RNAz p=0.597123 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 578-700, - strand, RNAz p=0.597123 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-236, gnl|bosTau2|chrX (14356364-14356131) | |
| 1-236, gnl|Hg17|chrX (153113896-153113589) | |
| 1-236, gnl|Mm7|chrX (69626456-69626098) | |
| 268-418, gnl|bosTau2|chrX (14355926-14355776) | |
| 268-418, gnl|canFam2|chrX (125112377-125112259) | |
| 268-418, gnl|danRer3|chr23 (26247758-26247634) | |
| 268-418, gnl|dasNov1|scaffold_1198 (45477-45584) | |
| 268-418, gnl|echTel1|scaffold_323719 (33900-34007) | |
| 268-418, gnl|fr1|chrUn (177082893-177083075) | |
| 268-418, gnl|galGal2|chr12 (8957390-8957274) | |
| 268-418, gnl|hg17|chrX (153113219-153113343) | |
| 268-418, gnl|Hg17|chrX (153113383-153113233) | |
| 268-418, gnl|loxAfr1|scaffold_56236 (12518-12629) | |
| 268-418, gnl|mm7|chrX (69625732-69625854) | |
| 268-418, gnl|Mm7|chrX (69625894-69625744) | |
| 268-418, gnl|monDom2|scaffold_197 (114495-114381) | |
| 268-418, gnl|oryCun1|scaffold_201170 (84891-84766) | |
| 268-418, gnl|panTro1|chr6 (130467864-130467756) | |
| 268-418, gnl|rheMac2|chrX (152391562-152391438) | |
| 268-418, gnl|rn3|chrX (160446188-160446066) | |
| 268-418, gnl|tetNig1|chrUn_random (109400958-109401082) | |
| 268-418, gnl|xenTro1|scaffold_257 (734974-735084) | |
| 538-700, gnl|bosTau2|chrX (14354692-14354530) | |
| 538-700, gnl|Hg17|chrX (153111794-153111632) | |
| 538-700, gnl|Mm7|chrX (69624666-69624504) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-236, gnl|bosTau2|chrX (14356364-14356131) | |
| 1-236, gnl|Hg17|chrX (153113896-153113589) | |
| 1-236, gnl|Mm7|chrX (69626456-69626098) | |
| 268-418, gnl|bosTau2|chrX (14355926-14355776) | |
| 268-418, gnl|canFam2|chrX (125112377-125112259) | |
| 268-418, gnl|danRer3|chr23 (26247758-26247634) | |
| 268-418, gnl|dasNov1|scaffold_1198 (45477-45584) | |
| 268-418, gnl|echTel1|scaffold_323719 (33900-34007) | |
| 268-418, gnl|fr1|chrUn (177082893-177083075) | |
| 268-418, gnl|galGal2|chr12 (8957390-8957274) | |
| 268-418, gnl|hg17|chrX (153113219-153113343) | |
| 268-418, gnl|Hg17|chrX (153113383-153113233) | |
| 268-418, gnl|loxAfr1|scaffold_56236 (12518-12629) | |
| 268-418, gnl|mm7|chrX (69625732-69625854) | |
| 268-418, gnl|Mm7|chrX (69625894-69625744) | |
| 268-418, gnl|monDom2|scaffold_197 (114495-114381) | |
| 268-418, gnl|oryCun1|scaffold_201170 (84891-84766) | |
| 268-418, gnl|panTro1|chr6 (130467864-130467756) | |
| 268-418, gnl|rheMac2|chrX (152391562-152391438) | |
| 268-418, gnl|rn3|chrX (160446188-160446066) | |
| 268-418, gnl|tetNig1|chrUn_random (109400958-109401082) | |
| 268-418, gnl|xenTro1|scaffold_257 (734974-735084) | |
| 538-700, gnl|bosTau2|chrX (14354692-14354530) | |
| 538-700, gnl|Hg17|chrX (153111794-153111632) | |
| 538-700, gnl|Mm7|chrX (69624666-69624504) |