Non-Coding RNA Search

Ss1.1-Pig4-TMW8033A11.5

Sequence:


               
               CTTTATTGCCATTCATGAAATATTTTTCAAAATGGAGAAGAAGAAAAGAAATCCTATTTC
ATTTTCAGTCAGTATGTATTACTGCCTTCCTATGTGCCAGGCCCTATACTAATTTCTAAA
TTCTTACCTCTGTGGTCTTGAAGTTTACCATGAAAGGCAGATAAATGTTTCCAGTAACTA
GAGAAGTTTTATGTTTTTCTCTAAAGACTTTGCTTTATGCCTGAAATAAAACTTTATGTG
GAAAAGAAAATGTGCAGTATTGACTGGAACATGTATTTCTTTGCCACTATACAATAAATT
CTTTTTAGGTTTACCCACTTTTACATATAAGTACTTGCCCCAAGTCAGTACTGCTGAATA
GTTAACAGAAGTGCTATCTTAGTTCATTTTATGGCCTCTTGGGGGATGCTGAAATTATCT
TAATTGGTTTCATGATTGAACTAAATGCAATGTCTTAAAACTGGGGTTTAAGAGCCTAGA
GAGCAAACTCAGGGCTCTCACACTACTGAGTGTTGTTGGTAACCACAGTGGGTGGCTCTT
CCGAGCTCACGTTTGGGTGACCCGACCACCTGTGCTTTTGGGAGCTCTTACTCACCCACT
CCAGTTTTTATCATTGTGGAGATATCAAGAGGGAGATGAACTTGGGAGGGATTTTTGTTT
TTGTTTGTGAGATCGCTGAATTAAATAAAGCAGTGTAAATGTGTTTTGTGGTGCTGTTAA
TAAACTATGTTGGGCAGAATCTTCTCTTAGTGTGCATTATGCCAGTACTGAATGTATGAG
GGGCTTATCCACCACCATCATGATAAATTTAACATTGTTCTTTCGGGTATTATGTTTTAT
TATGTAATGATTAAAACCTAACTCATGTAATCACACTTTCAAATGCAGTTGCTGATTCTT
TCATGTCAGTAAGTTTGGAATATGAAATATACTTAGGAGAGCTGCCTTTAGGCTTTTTTT
TTTTTCCTCTTGAAGATCTTAAACTGCTTGTTCAGAGGAAGGGGTTAGCAAAAAATCTTG
GAAAATTACTTCAAAAATAGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTATTGCCATTCATGAAATATTTTTCAAAATGGAGAAGAAGAAAAGAAATCCTATTTC
ATTTTCAGTCAGTATGTATTACTGCCTTCCTATGTGCCAGGCCCTATACTAATTTCTAAA
TTCTTACCTCTGTGGTCTTGAAGTTTACCATGAAAGGCAGATAAATGTTTCCAGTAACTA
GAGAAGTTTTATGTTTTTCTCTAAAGACTTTGCTTTATGCCTGAAATAAAACTTTATGTG
GAAAAGAAAATGTGCAGTATTGACTGGAACATGTATTTCTTTGCCACTATACAATAAATT
CTTTTTAGGTTTACCCACTTTTACATATAAGTACTTGCCCCAAGTCAGTACTGCTGAATA
GTTAACAGAAGTGCTATCTTAGTTCATTTTATGGCCTCTTGGGGGATGCTGAAATTATCT
TAATTGGTTTCATGATTGAACTAAATGCAATGTCTTAAAACTGGGGTTTAAGAGCCTAGA
GAGCAAACTCAGGGCTCTCACACTACTGAGTGTTGTTGGTAACCACAGTGGGTGGCTCTT
CCGAGCTCACGTTTGGGTGACCCGACCACCTGTGCTTTTGGGAGCTCTTACTCACCCACT
CCAGTTTTTATCATTGTGGAGATATCAAGAGGGAGATGAACTTGGGAGGGATTTTTGTTT
TTGTTTGTGAGATCGCTGAATTAAATAAAGCAGTGTAAATGTGTTTTGTGGTGCTGTTAA
TAAACTATGTTGGGCAGAATCTTCTCTTAGTGTGCATTATGCCAGTACTGAATGTATGAG
GGGCTTATCCACCACCATCATGATAAATTTAACATTGTTCTTTCGGGTATTATGTTTTAT
TATGTAATGATTAAAACCTAACTCATGTAATCACACTTTCAAATGCAGTTGCTGATTCTT
TCATGTCAGTAAGTTTGGAATATGAAATATACTTAGGAGAGCTGCCTTTAGGCTTTTTTT
TTTTTCCTCTTGAAGATCTTAAACTGCTTGTTCAGAGGAAGGGGTTAGCAAAAAATCTTG
GAAAATTACTTCAAAAATAGCCAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               455-574, - strand, RNAz p=0.888312
               

               
               870-984, + strand, RNAz p=0.640245

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               455-574, - strand, RNAz p=0.888312
               

               
               870-984, + strand, RNAz p=0.640245

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1044, gnl|bosTau2|chr4 (34343937-34344992)
               

               
               1-1044, gnl|Hg17|chr7 (32376359-32377334)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1044, gnl|bosTau2|chr4 (34343937-34344992)
               

               
               1-1044, gnl|Hg17|chr7 (32376359-32377334)

	455-574, - strand, RNAz p=0.888312
	870-984, + strand, RNAz p=0.640245

	1-1044, gnl\|bosTau2\|chr4 (34343937-34344992)
	1-1044, gnl\|Hg17\|chr7 (32376359-32377334)