Non-Coding RNA Search

Ss1.1-Pig4-TMW8033C22.5

Sequence:


               
               TCCAGCGGGAGCCTCCGAACTCCTCCAGCGTGAAGATCTTCCAGAAGGACTCTCCACCAT
GCAATGAGGCAAGAAATTTATGGCTTGGCCTGATTTAATGGGCCAGGCAGTTAAGAGTTC
TTTGCCAAGCTCTGAGCATAATTTAAAGGAACCAGGGCAGGAGAAAGGGCCCCATAACTC
ACATCCTTTAAGGGCTCGGAGAACAAGAGACACGTTGGATCGTTGAAAACATCTCTGCTC
CTCAGGCCAGAAAATACCGGCCTGTTCCTGGGGATTTTGGTCAAAGAACCAGAAGACTGC
ATGAATAGATGTGGCAGAAAAAGTAAGGAAAATACGTACAGGTCATAAATTTCTAGCCTA
ATGTTTCCTTTGTTACGTTCTGACCGGCTTGGTATTTATTTCATTGTGTTCTCACTCTTG
GTGTCTGTCCCCGCACCTTGTAAATGCCACCTTCTTAGCGGAGTAATTTTTCATTGACAC
GAACTGAAATATTGCCAGGACAGTGGCTTTGAGATCGTAGACATGGAGCTACAGACGACG
GAGTGGGAGTTCCCTGGCGGCCCAGCAGTTAAGGATCTGCCATTGGTACTGCCGTGGCTC
AGGTCACTGCTCTGGGAAAGGTCCTATCTGATCCCTGGCCAGAACTTCTGCATGCCATGG
GCGTGGCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGCGGGAGCCTCCGAACTCCTCCAGCGTGAAGATCTTCCAGAAGGACTCTCCACCAT
GCAATGAGGCAAGAAATTTATGGCTTGGCCTGATTTAATGGGCCAGGCAGTTAAGAGTTC
TTTGCCAAGCTCTGAGCATAATTTAAAGGAACCAGGGCAGGAGAAAGGGCCCCATAACTC
ACATCCTTTAAGGGCTCGGAGAACAAGAGACACGTTGGATCGTTGAAAACATCTCTGCTC
CTCAGGCCAGAAAATACCGGCCTGTTCCTGGGGATTTTGGTCAAAGAACCAGAAGACTGC
ATGAATAGATGTGGCAGAAAAAGTAAGGAAAATACGTACAGGTCATAAATTTCTAGCCTA
ATGTTTCCTTTGTTACGTTCTGACCGGCTTGGTATTTATTTCATTGTGTTCTCACTCTTG
GTGTCTGTCCCCGCACCTTGTAAATGCCACCTTCTTAGCGGAGTAATTTTTCATTGACAC
GAACTGAAATATTGCCAGGACAGTGGCTTTGAGATCGTAGACATGGAGCTACAGACGACG
GAGTGGGAGTTCCCTGGCGGCCCAGCAGTTAAGGATCTGCCATTGGTACTGCCGTGGCTC
AGGTCACTGCTCTGGGAAAGGTCCTATCTGATCCCTGGCCAGAACTTCTGCATGCCATGG
GCGTGGCCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               45-164, + strand, RNAz p=0.909146

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-164, + strand, RNAz p=0.909146

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               69-127, + strand, RNAmicro p=0.942866

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               69-127, + strand, RNAmicro p=0.942866

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               7-557, gnl|bosTau2|chr1 (100370920-100371470)
               

               
               7-557, gnl|canFam2|chr31 (34794582-34795227)
               

               
               7-557, gnl|dasNov1|scaffold_50895 (3239-2608)
               

               
               7-557, gnl|echTel1|scaffold_128643 (32-662)
               

               
               7-557, gnl|hg17|chr21 (37841200-37841848)
               

               
               7-557, gnl|Hg17|chr21 (37841241-37841796)
               

               
               7-557, gnl|mm7|chr16 (95020567-95021125)
               

               
               7-557, gnl|Mm7|chr16 (95020606-95021099)
               

               
               7-557, gnl|oryCun1|scaffold_157093 (3236-3848)
               

               
               7-557, gnl|panTro1|chr22 (37877399-37878047)
               

               
               7-557, gnl|rheMac2|chr3 (9096922-9096274)
               

               
               7-557, gnl|rn3|chr11 (35047228-35047777)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-557, gnl|bosTau2|chr1 (100370920-100371470)
               

               
               7-557, gnl|canFam2|chr31 (34794582-34795227)
               

               
               7-557, gnl|dasNov1|scaffold_50895 (3239-2608)
               

               
               7-557, gnl|echTel1|scaffold_128643 (32-662)
               

               
               7-557, gnl|hg17|chr21 (37841200-37841848)
               

               
               7-557, gnl|Hg17|chr21 (37841241-37841796)
               

               
               7-557, gnl|mm7|chr16 (95020567-95021125)
               

               
               7-557, gnl|Mm7|chr16 (95020606-95021099)
               

               
               7-557, gnl|oryCun1|scaffold_157093 (3236-3848)
               

               
               7-557, gnl|panTro1|chr22 (37877399-37878047)
               

               
               7-557, gnl|rheMac2|chr3 (9096922-9096274)
               

               
               7-557, gnl|rn3|chr11 (35047228-35047777)

	7-557, gnl\|bosTau2\|chr1 (100370920-100371470)
	7-557, gnl\|canFam2\|chr31 (34794582-34795227)
	7-557, gnl\|dasNov1\|scaffold_50895 (3239-2608)
	7-557, gnl\|echTel1\|scaffold_128643 (32-662)
	7-557, gnl\|hg17\|chr21 (37841200-37841848)
	7-557, gnl\|Hg17\|chr21 (37841241-37841796)
	7-557, gnl\|mm7\|chr16 (95020567-95021125)
	7-557, gnl\|Mm7\|chr16 (95020606-95021099)
	7-557, gnl\|oryCun1\|scaffold_157093 (3236-3848)
	7-557, gnl\|panTro1\|chr22 (37877399-37878047)
	7-557, gnl\|rheMac2\|chr3 (9096922-9096274)
	7-557, gnl\|rn3\|chr11 (35047228-35047777)