Non-Coding RNA Search

Ss1.1-Pig4-TMW8033C24.3

Sequence:


               
               CTAATGTGAAGAAAGACAAAGAGGACAAAGCCTTGAAGACAGAAAAGCAACCTAAGCAGC
CTGATAAAGAAGGAAAGTTAATCTGTTCTGAAAAGGGGAAGGTGTCAGAGAAGAACCTTC
CTAAGAACGAGAAGGAAGATAAGGAGAACATTTCAGAAAATGACAGAGAGTATTCTGGAG
ATGCTCAAGTGGATAAGAAACCTGAAAATGACATTGTGAAGAGTCCACAAGAAAACTTGA
GGGAGCCAAAAAGAAAACGAGGCAGACCCCCTTCCATAGCTCCTACTGCTGTGGATTCAA
ACAGTCAAACTTTGCAACCAATAACGTTGGAACTGAGAAGACGGAAAATATCAAAAGGAA
GTGAAGTCCCCATAAAACGTCCTCGGCTTGACAAAAATTCATCCCAGGTGAAATCTCCTT
TGGAAGCTGGCCAGGTTTCATCTGCACTAACTTGCCACTCCATTGGGGATGGACTGGGGC
CTGCAGGCTTGGAGTTGAACTGCAAGTCAATGGGAGAAAACGCTATGAAAACAGAACCGG
CTTCTCCCCTCACTGAGTTACAAGAGATTTCTACTGTGGCAGTAACAAATACTTTTAAGA
AAACAGATGATTTTGTGACATCTAAAGCACCAGCTGTCGACCTAGATCACAAGTTTAGGT
GCAAGGTTGCAGATTGTTTAAAATTTTTCCGCAAAGCCAAGCTCTTGCACTATCACATGA
AGTATTTCCACGGAATGGAGAAGTCACCAGAGCCGGAGGAGAACCCAGGAAAGAGGCATG
TCCAGACAAGGGGCTCTTCAGCTTCAGACAAGACCAGCCAGGAGAGCCTGACCAGGAAGC
GGGTCTCTGCCAGTTCCCCAACTGCAAAAGACAAGGAAAAGAATAAAGAGAAGAAATTCA
AAGAGTTTGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAATGTGAAGAAAGACAAAGAGGACAAAGCCTTGAAGACAGAAAAGCAACCTAAGCAGC
CTGATAAAGAAGGAAAGTTAATCTGTTCTGAAAAGGGGAAGGTGTCAGAGAAGAACCTTC
CTAAGAACGAGAAGGAAGATAAGGAGAACATTTCAGAAAATGACAGAGAGTATTCTGGAG
ATGCTCAAGTGGATAAGAAACCTGAAAATGACATTGTGAAGAGTCCACAAGAAAACTTGA
GGGAGCCAAAAAGAAAACGAGGCAGACCCCCTTCCATAGCTCCTACTGCTGTGGATTCAA
ACAGTCAAACTTTGCAACCAATAACGTTGGAACTGAGAAGACGGAAAATATCAAAAGGAA
GTGAAGTCCCCATAAAACGTCCTCGGCTTGACAAAAATTCATCCCAGGTGAAATCTCCTT
TGGAAGCTGGCCAGGTTTCATCTGCACTAACTTGCCACTCCATTGGGGATGGACTGGGGC
CTGCAGGCTTGGAGTTGAACTGCAAGTCAATGGGAGAAAACGCTATGAAAACAGAACCGG
CTTCTCCCCTCACTGAGTTACAAGAGATTTCTACTGTGGCAGTAACAAATACTTTTAAGA
AAACAGATGATTTTGTGACATCTAAAGCACCAGCTGTCGACCTAGATCACAAGTTTAGGT
GCAAGGTTGCAGATTGTTTAAAATTTTTCCGCAAAGCCAAGCTCTTGCACTATCACATGA
AGTATTTCCACGGAATGGAGAAGTCACCAGAGCCGGAGGAGAACCCAGGAAAGAGGCATG
TCCAGACAAGGGGCTCTTCAGCTTCAGACAAGACCAGCCAGGAGAGCCTGACCAGGAAGC
GGGTCTCTGCCAGTTCCCCAACTGCAAAAGACAAGGAAAAGAATAAAGAGAAGAAATTCA
AAGAGTTTGTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32492948|gb|AAN08621.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32492948|gb|AAN08621.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               5-283, - strand, RNAz p=0.965828

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-283, - strand, RNAz p=0.965828

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-298, gnl|bosTau2|chr13 (46280237-46279944)
               

               
               5-298, gnl|Hg17|chr20 (33914453-33914746)
               

               
               5-298, gnl|Mm7|chr2 (156008117-156008410)
               


               
               580-861, gnl|bosTau2|chr13 (46252460-46252179)
               

               
               580-861, gnl|Hg17|chr20 (33950703-33950984)
               

               
               580-861, gnl|Mm7|chr2 (156028656-156028937)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-298, gnl|bosTau2|chr13 (46280237-46279944)
               

               
               5-298, gnl|Hg17|chr20 (33914453-33914746)
               

               
               5-298, gnl|Mm7|chr2 (156008117-156008410)
               


               
               580-861, gnl|bosTau2|chr13 (46252460-46252179)
               

               
               580-861, gnl|Hg17|chr20 (33950703-33950984)
               

               
               580-861, gnl|Mm7|chr2 (156028656-156028937)

	5-298, gnl\|bosTau2\|chr13 (46280237-46279944)
	5-298, gnl\|Hg17\|chr20 (33914453-33914746)
	5-298, gnl\|Mm7\|chr2 (156008117-156008410)

	580-861, gnl\|bosTau2\|chr13 (46252460-46252179)
	580-861, gnl\|Hg17\|chr20 (33950703-33950984)
	580-861, gnl\|Mm7\|chr2 (156028656-156028937)