Non-Coding RNA Search

Ss1.1-Pig4-TMW8033D14.3

Sequence:


               
               CCCAGACTGGCACCTGAAGATGCCCAAGATGAAAATGCCCAAGTTCAGTGTGCCCGGGTT
CAAAGCGGAGGGCCCTGAAGTGGATGTAAATCTGCCCAAGCCTGATGTGGACGTTTCTGG
CCCCAAGGTAGCTGTTGGTGCTCCAGATGTGAGTATTGAGGGACCAGAAGGGAAATTGAA
AGGACCCAAATTTAAGATGCCCGAGATGAATATCAAAGCTCCAAAGATCACCATGCCAGA
TGTGGACCTACATTTGAAGGGCCCTAGTGTCAAAGGGGAGTATGATGTTACAGCGCCAAA
GGTTGGAGGTGAGATTAAAGTTCCTGATGTCGAACTCAAAAGTGCCAAAGTGGACATTGA
TGCTCCAGATGTGGGTGTGCATGGGCCAGACTGGCACCTGAAGATGCCCACAGTGAAAAT
GCCTAAGTTCAGCATGCCTGGCTTCAAAGGCGAGGGCCCAGAAGTGGATGTGAACCTGCC
CAAGGCTGACATTGACCTCACTGGACCCAAGGTGGATGTTGAAGTTCCAGATGTGAATAT
TGAAGGACCTGAAGGGAAGCTGAAGGGCCCCAAGTTTAAGATGCCTGAAATGAATATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGACTGGCACCTGAAGATGCCCAAGATGAAAATGCCCAAGTTCAGTGTGCCCGGGTT
CAAAGCGGAGGGCCCTGAAGTGGATGTAAATCTGCCCAAGCCTGATGTGGACGTTTCTGG
CCCCAAGGTAGCTGTTGGTGCTCCAGATGTGAGTATTGAGGGACCAGAAGGGAAATTGAA
AGGACCCAAATTTAAGATGCCCGAGATGAATATCAAAGCTCCAAAGATCACCATGCCAGA
TGTGGACCTACATTTGAAGGGCCCTAGTGTCAAAGGGGAGTATGATGTTACAGCGCCAAA
GGTTGGAGGTGAGATTAAAGTTCCTGATGTCGAACTCAAAAGTGCCAAAGTGGACATTGA
TGCTCCAGATGTGGGTGTGCATGGGCCAGACTGGCACCTGAAGATGCCCACAGTGAAAAT
GCCTAAGTTCAGCATGCCTGGCTTCAAAGGCGAGGGCCCAGAAGTGGATGTGAACCTGCC
CAAGGCTGACATTGACCTCACTGGACCCAAGGTGGATGTTGAAGTTCCAGATGTGAATAT
TGAAGGACCTGAAGGGAAGCTGAAGGGCCCCAAGTTTAAGATGCCTGAAATGAATATCAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61850576|ref|XP_597897.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61850576|ref|XP_597897.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               281-440, - strand, RNAz p=0.882223
               

               
               481-600, - strand, RNAz p=0.788708

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-440, - strand, RNAz p=0.882223
               

               
               481-600, - strand, RNAz p=0.788708

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-600, gnl|bosTau2|chr29 (31998922-31998323)
               

               
               1-600, gnl|Hg17|chr11 (62056239-62055640)
               

               
               1-600, gnl|Mm7|chr19 (8683744-8684337)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr29 (31998922-31998323)
               

               
               1-600, gnl|Hg17|chr11 (62056239-62055640)
               

               
               1-600, gnl|Mm7|chr19 (8683744-8684337)

	281-440, - strand, RNAz p=0.882223
	481-600, - strand, RNAz p=0.788708

	1-600, gnl\|bosTau2\|chr29 (31998922-31998323)
	1-600, gnl\|Hg17\|chr11 (62056239-62055640)
	1-600, gnl\|Mm7\|chr19 (8683744-8684337)