Non-Coding RNA Search

Ss1.1-Pig4-TMW8033J03.5

Sequence:


               
               GGAGGGGCCAGCCTTCTTCCTTGCCCTCTACTGATGCCCAAGAATCCATTGGAGCCACTG
TAATCACCACGTGCCAGACCCTGGCCACCCATGGCCACAGCACTGGCTCACGGTCCCTGG
GCCCGGCCCATGCTGGGTCCTACAAGCTCCAGACTTCTGTTGCCATTTGCAGCAGGGGAA
ATTGAGGAAGGACAAACAGGCTTACCCACTGGACCATGCAGGCAGCATGCCCAGGCCACC
CAACAGCTGAGACCCGTGATTCCTTCCCCAGCCAGAGGACTGTGACCAGCTTCAGCATCC
TGTGAGCTCCCAGCACTGGTACCAGCTTCCCCAGGCAACAGGCATCTAGCCACGTGGCAT
GTCTGCTAAGAAGGCCCCTCTTGTGACCACAAAAGTCTTCACTGTCCCAAGCCTGTAATA
AGGAAGCCAGCAGGAGCAGGGCCCTCTCCTCAAGCACAGTCCTACCACTGGTCTGCTTGG
CCTGAACCCCTGCTTGCCTGGGAGTGTCTCCCTGCTCCATTGGTGATCATGGCCCACCAG
AAACATAGGGTCCCACAGAGCTGAGCCTCAAAACCAGGCTTGCCTGGTGGTAGAGCCAGA
CCCTTCAGCACGAGGACATGGTCCTCTGTTGCCCCTGTAAACACTGAACCAATCAGGCAG
GTGCTGAAAGACCTGGCAGCCCCCAGGTACCTGTCACGGTCATGCATGAAGGGTGGGATG
AGGAACAGGACAAGCAAAGCAGCTGCCCTTGTGGCATTTGTTTTCTAGAGAAGGAAACAC
GACAGGAATTAAAGTAACTAAGTGTAGGTATTCGGAGGGAATTGCCTGCGCTGGTCGAAG
GTCAGAGAAGGCCTTTGTGAGGTGACATTGGAGCTGAGGCTTGATGGAGGGCGCAGGCCT
TGTAGAAAGTATCCGGCGGAAAGAATAACCATATGGAGGTTCCCAGGCTAGGAGTTGAAT
GACACGCGAGGAGCAGCAATGAAACTAGGAGGCATATGGAGGTTCCCAGGCTAGGGATCT
AATAGGAGCTGCAGCTGCCGGCCTCCACCACAGCCACAGCAACGCGTGATCCCAGCTGTG
TCTGTGACCTACACCACAGCTCATGGCAACGCCAGGTCCTTAACCCACTGGGCAAGGCCA
GGGATCGAAACCTGAAACCTCATGGTTCCCAGTCGTATTCCTTAACCACTGAGCCATGAT
GGGAATTCCCAGGGACATTTATTCGTGATTCTATTCCTGTTCTGTTTTACCCTCTGAGTC
ACACTCTCCAGCTTAGGCCCTCACAATGGCAACGTGGCTGCCATAGCTCCCAACAGTACG
CCCCTCACCAAAACAGGAGCAAAGGCACAAAGTAGGTGGCTACCAGCATAGTGCAGAAAA
AGTGCAAAGCCTTTCTAGTGCCTCCCCTTTCAGAGCAGTGTCAGGCAAACAAAAGGAGAT
GGCCTTAATTCAGTTGGACCAGCCATCTCTCTTGTCCTGGGTAAGTTGCTGTTAGAACAA
AATTGGGTTCTCAGCACAGAAGAAGGATGGGCTGGTACAGGATCCAGTGTATCTGTCACT
CTCCATCTTCTAGCCCCAATCTCCTCAGCCCTGGAAGAACCAGACTTTCCTTGGACAAAT
GAACTGGTTAAGTAAGAAACCACTGATGGATGTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGGGCCAGCCTTCTTCCTTGCCCTCTACTGATGCCCAAGAATCCATTGGAGCCACTG
TAATCACCACGTGCCAGACCCTGGCCACCCATGGCCACAGCACTGGCTCACGGTCCCTGG
GCCCGGCCCATGCTGGGTCCTACAAGCTCCAGACTTCTGTTGCCATTTGCAGCAGGGGAA
ATTGAGGAAGGACAAACAGGCTTACCCACTGGACCATGCAGGCAGCATGCCCAGGCCACC
CAACAGCTGAGACCCGTGATTCCTTCCCCAGCCAGAGGACTGTGACCAGCTTCAGCATCC
TGTGAGCTCCCAGCACTGGTACCAGCTTCCCCAGGCAACAGGCATCTAGCCACGTGGCAT
GTCTGCTAAGAAGGCCCCTCTTGTGACCACAAAAGTCTTCACTGTCCCAAGCCTGTAATA
AGGAAGCCAGCAGGAGCAGGGCCCTCTCCTCAAGCACAGTCCTACCACTGGTCTGCTTGG
CCTGAACCCCTGCTTGCCTGGGAGTGTCTCCCTGCTCCATTGGTGATCATGGCCCACCAG
AAACATAGGGTCCCACAGAGCTGAGCCTCAAAACCAGGCTTGCCTGGTGGTAGAGCCAGA
CCCTTCAGCACGAGGACATGGTCCTCTGTTGCCCCTGTAAACACTGAACCAATCAGGCAG
GTGCTGAAAGACCTGGCAGCCCCCAGGTACCTGTCACGGTCATGCATGAAGGGTGGGATG
AGGAACAGGACAAGCAAAGCAGCTGCCCTTGTGGCATTTGTTTTCTAGAGAAGGAAACAC
GACAGGAATTAAAGTAACTAAGTGTAGGTATTCGGAGGGAATTGCCTGCGCTGGTCGAAG
GTCAGAGAAGGCCTTTGTGAGGTGACATTGGAGCTGAGGCTTGATGGAGGGCGCAGGCCT
TGTAGAAAGTATCCGGCGGAAAGAATAACCATATGGAGGTTCCCAGGCTAGGAGTTGAAT
GACACGCGAGGAGCAGCAATGAAACTAGGAGGCATATGGAGGTTCCCAGGCTAGGGATCT
AATAGGAGCTGCAGCTGCCGGCCTCCACCACAGCCACAGCAACGCGTGATCCCAGCTGTG
TCTGTGACCTACACCACAGCTCATGGCAACGCCAGGTCCTTAACCCACTGGGCAAGGCCA
GGGATCGAAACCTGAAACCTCATGGTTCCCAGTCGTATTCCTTAACCACTGAGCCATGAT
GGGAATTCCCAGGGACATTTATTCGTGATTCTATTCCTGTTCTGTTTTACCCTCTGAGTC
ACACTCTCCAGCTTAGGCCCTCACAATGGCAACGTGGCTGCCATAGCTCCCAACAGTACG
CCCCTCACCAAAACAGGAGCAAAGGCACAAAGTAGGTGGCTACCAGCATAGTGCAGAAAA
AGTGCAAAGCCTTTCTAGTGCCTCCCCTTTCAGAGCAGTGTCAGGCAAACAAAAGGAGAT
GGCCTTAATTCAGTTGGACCAGCCATCTCTCTTGTCCTGGGTAAGTTGCTGTTAGAACAA
AATTGGGTTCTCAGCACAGAAGAAGGATGGGCTGGTACAGGATCCAGTGTATCTGTCACT
CTCCATCTTCTAGCCCCAATCTCCTCAGCCCTGGAAGAACCAGACTTTCCTTGGACAAAT
GAACTGGTTAAGTAAGAAACCACTGATGGATGTGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1516-1615, - strand, RNAz p=0.794599

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1516-1615, - strand, RNAz p=0.794599

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1533-1626, - strand, RNAmicro p=0.975015

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1533-1626, - strand, RNAmicro p=0.975015

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               34-545, gnl|bosTau2|chr18 (41884639-41885146)
               


               
               546-906, gnl|bosTau2|chr18 (41885175-41885541)
               


               
               1253-1650, gnl|bosTau2|chr18 (41886480-41886859)
               

               
               1253-1650, gnl|Hg17|chr19 (41289947-41290604)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-545, gnl|bosTau2|chr18 (41884639-41885146)
               


               
               546-906, gnl|bosTau2|chr18 (41885175-41885541)
               


               
               1253-1650, gnl|bosTau2|chr18 (41886480-41886859)
               

               
               1253-1650, gnl|Hg17|chr19 (41289947-41290604)

	34-545, gnl\|bosTau2\|chr18 (41884639-41885146)

	546-906, gnl\|bosTau2\|chr18 (41885175-41885541)

	1253-1650, gnl\|bosTau2\|chr18 (41886480-41886859)
	1253-1650, gnl\|Hg17\|chr19 (41289947-41290604)