Non-Coding RNA Search

Ss1.1-Pig4-TMW8033J20.3

Sequence:


               
               AAAAGGTTATTTATCCCCTCCTCCGTACAGGGATTGATATCAGGTAATCTCCAGTCTGGC
CTGCTTCATGGCTTCCCTGGGGCTCCCCCATCACCTCTTCATGTGGCTCTAATTCTGAGA
GAGTTGACTCAGCTGCAGAGCATGTGTTCTAGAAAGAGGCAGGATCCCATGGTAGCTCTC
CCTGGCCTAACTGTGAGCAAGATGTGTGATAGTGGACAAATTGCCCAATTTCTCTGAGGT
CTTCAGTTTGGTCATTAGACCAGACCCTGCGTTGAAGCTTCCCATCTGTGACAGCCTAGG
GTTCTGACCTCTCCATCTTTACCGCCCCACAGATGGGAGGCTGTGGGAGGATGGGCACGG
GGAACAATTCAGCCCCTCTTGCTAAAGCAAGCCTCTCACATATTGGGAGGCTGTTTTATG
CTGTTATCAGCATATTCACACCCTCCCTTAAGCTCTTCCCTGAGCCAGGATATTTTCTAA
TAAGATAAATAAATGCAGTTTTTTGAGGATGATTCGAGACTAGAACCACAAATCAAGACC
ACTTAACTGATGGGCCTGGAAAAATATGTCCCTGCTTCATCACTTCTCTTATTTGTAGAC
CCCTCTTTATTATACCTGGAGTTTTCATGAAAACTGTATAGTTTGGCATTTTGCTTATTT
TTATTTGGCCAGTTTGCTGGTTAGGTTAATTGGTTGCATATTTCTAGGAACCATATGAAA
GCTATAAATGCGGTTTGTAAATGGCTGTCGCGGAGGTTTCTGGCTCATGTTTGCTGGGCA
GTGGCTTTAAGAACAGTCTGAAGCCCTCAAAGACATGAAGCTTGTATGGCTCACTAGTCT
GGGTATCTGTTCTATGGCCTCCAGATGTGCAGTCTTGTGGGTTAATTTTCACCGCTCTGT
TGATTGTCAACAACCGGGAGGTACTTGCCACAAGCAATTTGGGGACCTGAGACTCATATT
TTAAAAAAGAATTTCCTGACCACTTTCCAAGTAGCAAAGAAAGTGAAAACCTCACCAAAA
GATGTGAGACTGAATGAATTAAAAAACCCCAGAGGCAGGAATTCTCAACCTGAATCAGAC
AAGGAAGGGCTCGCTTTGAAAGGGCAGTCACAGCATAAATTGTACTTCACGTTATTGATA
TTTTTAGCTTGTAATTATACAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGGTTATTTATCCCCTCCTCCGTACAGGGATTGATATCAGGTAATCTCCAGTCTGGC
CTGCTTCATGGCTTCCCTGGGGCTCCCCCATCACCTCTTCATGTGGCTCTAATTCTGAGA
GAGTTGACTCAGCTGCAGAGCATGTGTTCTAGAAAGAGGCAGGATCCCATGGTAGCTCTC
CCTGGCCTAACTGTGAGCAAGATGTGTGATAGTGGACAAATTGCCCAATTTCTCTGAGGT
CTTCAGTTTGGTCATTAGACCAGACCCTGCGTTGAAGCTTCCCATCTGTGACAGCCTAGG
GTTCTGACCTCTCCATCTTTACCGCCCCACAGATGGGAGGCTGTGGGAGGATGGGCACGG
GGAACAATTCAGCCCCTCTTGCTAAAGCAAGCCTCTCACATATTGGGAGGCTGTTTTATG
CTGTTATCAGCATATTCACACCCTCCCTTAAGCTCTTCCCTGAGCCAGGATATTTTCTAA
TAAGATAAATAAATGCAGTTTTTTGAGGATGATTCGAGACTAGAACCACAAATCAAGACC
ACTTAACTGATGGGCCTGGAAAAATATGTCCCTGCTTCATCACTTCTCTTATTTGTAGAC
CCCTCTTTATTATACCTGGAGTTTTCATGAAAACTGTATAGTTTGGCATTTTGCTTATTT
TTATTTGGCCAGTTTGCTGGTTAGGTTAATTGGTTGCATATTTCTAGGAACCATATGAAA
GCTATAAATGCGGTTTGTAAATGGCTGTCGCGGAGGTTTCTGGCTCATGTTTGCTGGGCA
GTGGCTTTAAGAACAGTCTGAAGCCCTCAAAGACATGAAGCTTGTATGGCTCACTAGTCT
GGGTATCTGTTCTATGGCCTCCAGATGTGCAGTCTTGTGGGTTAATTTTCACCGCTCTGT
TGATTGTCAACAACCGGGAGGTACTTGCCACAAGCAATTTGGGGACCTGAGACTCATATT
TTAAAAAAGAATTTCCTGACCACTTTCCAAGTAGCAAAGAAAGTGAAAACCTCACCAAAA
GATGTGAGACTGAATGAATTAAAAAACCCCAGAGGCAGGAATTCTCAACCTGAATCAGAC
AAGGAAGGGCTCGCTTTGAAAGGGCAGTCACAGCATAAATTGTACTTCACGTTATTGATA
TTTTTAGCTTGTAATTATACAGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               355-458, - strand, RNAz p=0.9909
               

               
               941-1087, - strand, RNAz p=0.918888

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               355-458, - strand, RNAz p=0.9909
               

               
               941-1087, - strand, RNAz p=0.918888

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1164, gnl|bosTau2|chr1 (48979842-48980989)
               

               
               1-1164, gnl|Hg17|chr3 (190066996-190068611)
               

               
               1-1164, gnl|Mm7|chr16 (24632441-24633462)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1164, gnl|bosTau2|chr1 (48979842-48980989)
               

               
               1-1164, gnl|Hg17|chr3 (190066996-190068611)
               

               
               1-1164, gnl|Mm7|chr16 (24632441-24633462)

	355-458, - strand, RNAz p=0.9909
	941-1087, - strand, RNAz p=0.918888

	1-1164, gnl\|bosTau2\|chr1 (48979842-48980989)
	1-1164, gnl\|Hg17\|chr3 (190066996-190068611)
	1-1164, gnl\|Mm7\|chr16 (24632441-24633462)