Ss1.1-Pig4-TMW8033J24.3
|
TGACAATGTCCTCTTCCCATTCACCTGTGCCCCAAGTGACAGAGACTGTAGCTTCTCCTG
CTCTACACCAGCCCCCCCCGCCTTTCTTCCGTATTCCCCCAGCTCTGCAATTGACTCTGT
TCGGCCAGTCCACCTTGCACCGGCCAGTCAAGCCGCCCCTGTAGAAAACACCCTTCCGCC
CCCCTCTCGGCTAGCGCTACCCTTCCGTGGGCAGGAAAGCCAGGTCAGGAGAACCCAATG
GAGAATTTATGGTGAATCGATTCCCCGGGCTCCTTTCCGGAGCAAGTTGTGGAGGACAGG
AAGGAGCAAAGACTCCCCAGCTCGGCTCCGGCTCCGAGCTTGTTGACTTGTTCCTCCCAT
CCGGCCCAACCCGACCCGTGCGGAGGAGCCTCGGGCTTGGCAGCTGCTGCTCCAGCGCAG
AAGCGCAGAGACCGGCTCTGCGCCCGGCTTTGCCTCTCGAGACTCGGGCCTGGATGGCGA
CCTGCGCTGCCGCTGCGCGCACTCTTCTGGGAAGCGTCCCGCGTGCTAAGGAAAGAGGCG
AAATCGCATCTAGGCATTAGGCCGGGAGAGCTTATGTTGCTTCCCTTTCCCTCCTCCTGT
TACCCCACCTCTCCAGTCCCCTTCAATTCCATGGACTCTCGCCCCTGCTTCTCCAGACCC
TACAAGGGAACATTCCAGTAGAACTTTTGTTTTTTCTTTTTTTCTTTTTTGCTTTGTCGG
TGACAGTCGTGAAATTGTGCTGTGTTCTGTGATTTCTTTGGGGGTGATTGTCTCGCCTGT
TTTCAGTTGTCGCTTATATGGGAGGGTTGTGGGTGGGAGTGGGGAGGGCGAGGGGCTTAG
AGCTCTGATTGTTTGTTTTGGAAGAAAAAAAAAGCAAGAAAAAGAACAAAAAATATATAT
CACTCTAGAAAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGACAATGTCCTCTTCCCATTCACCTGTGCCCCAAGTGACAGAGACTGTAGCTTCTCCTG
CTCTACACCAGCCCCCCCCGCCTTTCTTCCGTATTCCCCCAGCTCTGCAATTGACTCTGT
TCGGCCAGTCCACCTTGCACCGGCCAGTCAAGCCGCCCCTGTAGAAAACACCCTTCCGCC
CCCCTCTCGGCTAGCGCTACCCTTCCGTGGGCAGGAAAGCCAGGTCAGGAGAACCCAATG
GAGAATTTATGGTGAATCGATTCCCCGGGCTCCTTTCCGGAGCAAGTTGTGGAGGACAGG
AAGGAGCAAAGACTCCCCAGCTCGGCTCCGGCTCCGAGCTTGTTGACTTGTTCCTCCCAT
CCGGCCCAACCCGACCCGTGCGGAGGAGCCTCGGGCTTGGCAGCTGCTGCTCCAGCGCAG
AAGCGCAGAGACCGGCTCTGCGCCCGGCTTTGCCTCTCGAGACTCGGGCCTGGATGGCGA
CCTGCGCTGCCGCTGCGCGCACTCTTCTGGGAAGCGTCCCGCGTGCTAAGGAAAGAGGCG
AAATCGCATCTAGGCATTAGGCCGGGAGAGCTTATGTTGCTTCCCTTTCCCTCCTCCTGT
TACCCCACCTCTCCAGTCCCCTTCAATTCCATGGACTCTCGCCCCTGCTTCTCCAGACCC
TACAAGGGAACATTCCAGTAGAACTTTTGTTTTTTCTTTTTTTCTTTTTTGCTTTGTCGG
TGACAGTCGTGAAATTGTGCTGTGTTCTGTGATTTCTTTGGGGGTGATTGTCTCGCCTGT
TTTCAGTTGTCGCTTATATGGGAGGGTTGTGGGTGGGAGTGGGGAGGGCGAGGGGCTTAG
AGCTCTGATTGTTTGTTTTGGAAGAAAAAAAAAGCAAGAAAAAGAACAAAAAATATATAT
CACTCTAGAAAC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
513-629, - strand, RNAmicro p=0.933904 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
513-629, - strand, RNAmicro p=0.933904 |
|
1-436, gnl|bosTau2|chr19 (31238564-31238146) |
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1-436, gnl|Hg17|chr17 (44054387-44053971) |
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1-436, gnl|Mm7|chr11 (96384762-96385214) |
| |
|
495-909, gnl|bosTau2|chr19 (31238129-31237741) |
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495-909, gnl|canFam2|chr9 (28210833-28211459) |
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495-909, gnl|dasNov1|scaffold_118289 (1612-2180) |
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495-909, gnl|echTel1|scaffold_316744 (54648-54070) |
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495-909, gnl|hg17|chr17 (44053518-44054116) |
|
495-909, gnl|Hg17|chr17 (44053920-44053524) |
|
495-909, gnl|mm7|chr11 (96385639-96385034) |
|
495-909, gnl|Mm7|chr11 (96385229-96385631) |
|
495-909, gnl|monDom2|scaffold_18 (45575253-45574602) |
|
495-909, gnl|panTro1|chr19_random (43002539-43003125) |
|
495-909, gnl|rheMac2|chr16 (32850917-32851512) |
|
495-909, gnl|rn3|chr10 (85021733-85021099) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-436, gnl|bosTau2|chr19 (31238564-31238146) |
|
1-436, gnl|Hg17|chr17 (44054387-44053971) |
|
1-436, gnl|Mm7|chr11 (96384762-96385214) |
| |
|
495-909, gnl|bosTau2|chr19 (31238129-31237741) |
|
495-909, gnl|canFam2|chr9 (28210833-28211459) |
|
495-909, gnl|dasNov1|scaffold_118289 (1612-2180) |
|
495-909, gnl|echTel1|scaffold_316744 (54648-54070) |
|
495-909, gnl|hg17|chr17 (44053518-44054116) |
|
495-909, gnl|Hg17|chr17 (44053920-44053524) |
|
495-909, gnl|mm7|chr11 (96385639-96385034) |
|
495-909, gnl|Mm7|chr11 (96385229-96385631) |
|
495-909, gnl|monDom2|scaffold_18 (45575253-45574602) |
|
495-909, gnl|panTro1|chr19_random (43002539-43003125) |
|
495-909, gnl|rheMac2|chr16 (32850917-32851512) |
|
495-909, gnl|rn3|chr10 (85021733-85021099) |
