Ss1.1-Pig4-TMW8033M04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAATGGAAACTGATGTGGATGTTGCAGATGTGACTATGGAAAGTAGTCCTGGCTCATC CATCTCTATGGAGCATCGGCTGGATGTTGAACTAAGAGCATCAAGTTCTAGCAGCACTAG CATCTCCTCTGGCCCTGGCCCTCGTCCAGGAGTCCAGTGTATTCCACAGCGAGCTGCACT TCTCAAATCAATGTTGAATTTCCTCAAGAAGGCCATTCAAGACCCTGCTTTCTCAGATGG CATACGACATGTGATGGATGGTTCTCTGCCTACCTCCCTGAAACACATCATCAGCAACGC AGAATACTATGGCCCATCGCTCTTTCTCCTAGCTACTGAAGTGGTGACTGTGTTCGTATT TCAAGAACCATCACTGCTGTCCTCACTCCAGGATAATGGATTGACAGATGTCATGCTGCA TGCTCTGCTTATCAAAGATGTTCCTGCTACCCGTGAAGTCCTTGGCTCCCTCCCAAATGT ATTCAGTGCACTCTGCTTGAATGCCCGAGGTCTTCAGTCATTTGTACAGTGTCAACCTTT TGAACGTCTCTTCAAAGTTCTTTTGTCTCCAGATTACCTCCCAGCCATGCGGAGGAGGAG GAGTTCTGATCCTCTTGGGGATACTGCCTCCAACCTGGGGAGTGCTGTTGATGAGCTTAT GAGACATCAGCCCACCCTCAAAACAGATGCGACAACTGCGATCATCAAGTTACTTGAAGA AATCTGTAATCTTGGAAGAGACCCTAAGTACATCTGTCAGAAGCCATCAATCCAGAAGGC AGATGGCACTGCCACTGCTCCTCCCCCAAGGTCTAATCATGCTGCAGAAGAGGCCTCTAG TGAAGATGAAGAGGAAGAGGAAGTACAGGCCATGCAGAGCTTTAATTCTACCCAGCAGAA TGAAACTGAGCCTAATCAGCAGGTTGTTGGTACAGAGGAACGTATTCCTATTCCCCTCAT GGATTACATCCTTAATGTGATGAAATTTGTGGAATCTATTCTGAGCAACAATACAACCGA TGACCACTGCCAGGAATTTGTGAATCAGAAAGGACTCTTGCCTTTGGTTACCATTTTGGG TCTTCCTAATCTGCCCATTGACTTTCCCACATCTGCAGCTTGTCAGGCTGTTGCAGGTGT CTGCAAATCCATATTGACACTGTCACATGAACCCAAAGTCCTTCAGGAGGGTCTTCTGCA GTTGGACTCCATTCTTTCCTCCTTGGAGCCCTTACACCGCCCAATTGAATCCCCTGGGGG CTCAGTGTTGCTGCGAGAACTGGCTTGTGCAGGCAATGTTGCTGATGCTACCCTATCAGC TCAGGCCACACCTCTACTGCATGCACTCACTGCTGCTCACGCCTACATCATGATGTTTGT TCATACATGCAGAGTTGGACAGAGTGAAATTCGTTCCATCTCCGTAAACCAGTGGGGCTC TCAGTTGGGTCTGAGTGTTCTAAGCAAGCTGAGCCAGTTATACTGTTCCCTGGTGTGGGA AAGCACTGTCCTTCTATCCCTGTGTACTCCAAACAGCCTACCATCTGGGTGTGAATTTGG TCAGGCGGACATGCAGAAACTTGTTCCAAAGGATGAGAAGGCAGGTACGACCCAGGGCGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAATGGAAACTGATGTGGATGTTGCAGATGTGACTATGGAAAGTAGTCCTGGCTCATC CATCTCTATGGAGCATCGGCTGGATGTTGAACTAAGAGCATCAAGTTCTAGCAGCACTAG CATCTCCTCTGGCCCTGGCCCTCGTCCAGGAGTCCAGTGTATTCCACAGCGAGCTGCACT TCTCAAATCAATGTTGAATTTCCTCAAGAAGGCCATTCAAGACCCTGCTTTCTCAGATGG CATACGACATGTGATGGATGGTTCTCTGCCTACCTCCCTGAAACACATCATCAGCAACGC AGAATACTATGGCCCATCGCTCTTTCTCCTAGCTACTGAAGTGGTGACTGTGTTCGTATT TCAAGAACCATCACTGCTGTCCTCACTCCAGGATAATGGATTGACAGATGTCATGCTGCA TGCTCTGCTTATCAAAGATGTTCCTGCTACCCGTGAAGTCCTTGGCTCCCTCCCAAATGT ATTCAGTGCACTCTGCTTGAATGCCCGAGGTCTTCAGTCATTTGTACAGTGTCAACCTTT TGAACGTCTCTTCAAAGTTCTTTTGTCTCCAGATTACCTCCCAGCCATGCGGAGGAGGAG GAGTTCTGATCCTCTTGGGGATACTGCCTCCAACCTGGGGAGTGCTGTTGATGAGCTTAT GAGACATCAGCCCACCCTCAAAACAGATGCGACAACTGCGATCATCAAGTTACTTGAAGA AATCTGTAATCTTGGAAGAGACCCTAAGTACATCTGTCAGAAGCCATCAATCCAGAAGGC AGATGGCACTGCCACTGCTCCTCCCCCAAGGTCTAATCATGCTGCAGAAGAGGCCTCTAG TGAAGATGAAGAGGAAGAGGAAGTACAGGCCATGCAGAGCTTTAATTCTACCCAGCAGAA TGAAACTGAGCCTAATCAGCAGGTTGTTGGTACAGAGGAACGTATTCCTATTCCCCTCAT GGATTACATCCTTAATGTGATGAAATTTGTGGAATCTATTCTGAGCAACAATACAACCGA TGACCACTGCCAGGAATTTGTGAATCAGAAAGGACTCTTGCCTTTGGTTACCATTTTGGG TCTTCCTAATCTGCCCATTGACTTTCCCACATCTGCAGCTTGTCAGGCTGTTGCAGGTGT CTGCAAATCCATATTGACACTGTCACATGAACCCAAAGTCCTTCAGGAGGGTCTTCTGCA GTTGGACTCCATTCTTTCCTCCTTGGAGCCCTTACACCGCCCAATTGAATCCCCTGGGGG CTCAGTGTTGCTGCGAGAACTGGCTTGTGCAGGCAATGTTGCTGATGCTACCCTATCAGC TCAGGCCACACCTCTACTGCATGCACTCACTGCTGCTCACGCCTACATCATGATGTTTGT TCATACATGCAGAGTTGGACAGAGTGAAATTCGTTCCATCTCCGTAAACCAGTGGGGCTC TCAGTTGGGTCTGAGTGTTCTAAGCAAGCTGAGCCAGTTATACTGTTCCCTGGTGTGGGA AAGCACTGTCCTTCTATCCCTGTGTACTCCAAACAGCCTACCATCTGGGTGTGAATTTGG TCAGGCGGACATGCAGAAACTTGTTCCAAAGGATGAGAAGGCAGGTACGACCCAGGGCGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 747-866, - strand, RNAz p=0.791613 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 747-866, - strand, RNAz p=0.791613 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 23-153, gnl|bosTau2|chrX (26985049-26984919) | |
| 23-153, gnl|canFam2|chrX (45292629-45292765) | |
| 23-153, gnl|dasNov1|scaffold_74456 (1253-1383) | |
| 23-153, gnl|hg17|chr16 (34814217-34814371) | |
| 23-153, gnl|Hg17|chrX (53536011-53535764) | |
| 23-153, gnl|loxAfr1|scaffold_16758 (16662-16532) | |
| 23-153, gnl|mm7|chrX (146618285-146618131) | |
| 23-153, gnl|Mm7|chrX (146618129-146618367) | |
| 23-153, gnl|oryCun1|scaffold_179758 (99570-99763) | |
| 23-153, gnl|panTro1|chrUn_random (7853294-7853140) | |
| 23-153, gnl|rheMac2|chrX (51942045-51942202) | |
| 23-153, gnl|rn3|chrX (41375884-41375730) | |
| 440-618, gnl|bosTau2|chrX (26979412-26979234) | |
| 440-618, gnl|Hg17|chrX (53527129-53526951) | |
| 440-618, gnl|Mm7|chrX (146621327-146621505) | |
| 708-922, gnl|bosTau2|chrX (26977235-26977021) | |
| 708-922, gnl|Hg17|chrX (53524729-53524515) | |
| 708-922, gnl|Mm7|chrX (146623235-146623449) | |
| 1156-1402, gnl|bosTau2|chrX (26965209-26964963) | |
| 1156-1402, gnl|canFam2|chrX (45273841-45274102) | |
| 1156-1402, gnl|danRer3|chr23 (39362457-39362204) | |
| 1156-1402, gnl|dasNov1|scaffold_2778 (65816-66082) | |
| 1156-1402, gnl|echTel1|scaffold_268305 (1596-1852) | |
| 1156-1402, gnl|fr1|chrUn (19835370-19835113) | |
| 1156-1402, gnl|hg17|chrX (53514556-53514822) | |
| 1156-1402, gnl|Hg17|chrX (53514817-53514571) | |
| 1156-1402, gnl|loxAfr1|scaffold_120005 (1036-776) | |
| 1156-1402, gnl|mm7|chrX (146633469-146633204) | |
| 1156-1402, gnl|Mm7|chrX (146633207-146633453) | |
| 1156-1402, gnl|monDom2|scaffold_255 (67498-67764) | |
| 1156-1402, gnl|oryCun1|scaffold_214071 (93913-94179) | |
| 1156-1402, gnl|panTro1|chrX (54762253-54762519) | |
| 1156-1402, gnl|rheMac2|chrX (51919092-51919358) | |
| 1156-1402, gnl|rn3|chrX (41391641-41391375) | |
| 1156-1402, gnl|tetNig1|chr9 (3579227-3578969) | |
| 1156-1402, gnl|xenTro1|scaffold_750 (572601-572857) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 23-153, gnl|bosTau2|chrX (26985049-26984919) | |
| 23-153, gnl|canFam2|chrX (45292629-45292765) | |
| 23-153, gnl|dasNov1|scaffold_74456 (1253-1383) | |
| 23-153, gnl|hg17|chr16 (34814217-34814371) | |
| 23-153, gnl|Hg17|chrX (53536011-53535764) | |
| 23-153, gnl|loxAfr1|scaffold_16758 (16662-16532) | |
| 23-153, gnl|mm7|chrX (146618285-146618131) | |
| 23-153, gnl|Mm7|chrX (146618129-146618367) | |
| 23-153, gnl|oryCun1|scaffold_179758 (99570-99763) | |
| 23-153, gnl|panTro1|chrUn_random (7853294-7853140) | |
| 23-153, gnl|rheMac2|chrX (51942045-51942202) | |
| 23-153, gnl|rn3|chrX (41375884-41375730) | |
| 440-618, gnl|bosTau2|chrX (26979412-26979234) | |
| 440-618, gnl|Hg17|chrX (53527129-53526951) | |
| 440-618, gnl|Mm7|chrX (146621327-146621505) | |
| 708-922, gnl|bosTau2|chrX (26977235-26977021) | |
| 708-922, gnl|Hg17|chrX (53524729-53524515) | |
| 708-922, gnl|Mm7|chrX (146623235-146623449) | |
| 1156-1402, gnl|bosTau2|chrX (26965209-26964963) | |
| 1156-1402, gnl|canFam2|chrX (45273841-45274102) | |
| 1156-1402, gnl|danRer3|chr23 (39362457-39362204) | |
| 1156-1402, gnl|dasNov1|scaffold_2778 (65816-66082) | |
| 1156-1402, gnl|echTel1|scaffold_268305 (1596-1852) | |
| 1156-1402, gnl|fr1|chrUn (19835370-19835113) | |
| 1156-1402, gnl|hg17|chrX (53514556-53514822) | |
| 1156-1402, gnl|Hg17|chrX (53514817-53514571) | |
| 1156-1402, gnl|loxAfr1|scaffold_120005 (1036-776) | |
| 1156-1402, gnl|mm7|chrX (146633469-146633204) | |
| 1156-1402, gnl|Mm7|chrX (146633207-146633453) | |
| 1156-1402, gnl|monDom2|scaffold_255 (67498-67764) | |
| 1156-1402, gnl|oryCun1|scaffold_214071 (93913-94179) | |
| 1156-1402, gnl|panTro1|chrX (54762253-54762519) | |
| 1156-1402, gnl|rheMac2|chrX (51919092-51919358) | |
| 1156-1402, gnl|rn3|chrX (41391641-41391375) | |
| 1156-1402, gnl|tetNig1|chr9 (3579227-3578969) | |
| 1156-1402, gnl|xenTro1|scaffold_750 (572601-572857) |