Non-Coding RNA Search

Ss1.1-Pig4-TMW8033N20.5

Sequence:


               
               CTGTCCCAGCCCTAATGTGAGTAGTGCTGAGGTGGAGAAATCCTGCCTTAGAGTTACCAC
TTGGTGAGGACCCAAGCGATTATTTTATTCTAAATCTTTAAAAAACTTACATAGTCCTTA
GTCATACTCTGCTTAGTAAAAACCTAGCATATAGACATCAGTTTCAAACAGATAAACATG
ATTGTCAAAGTTCCTGTAAACGTCGAGCCCCTGTGGAAATTTAAATGGAAGGGTGTCTAG
GTGAGACCATTAAAATAGACACATTGGAAACCTTTATTAAGTTAAATTTTATTAGAAAAC
GTCTCTGAAATTGTGTCAGTCTGTAGGCATGTGAAAAATTTTAGGGCTTTTCTTTGAAAA
GCATCTCTCTTTCAAAAGGCTAAGCATACCTCACAGGTCACTATTTTTAAAAAATTGAAA
ATGCCTTTAAAGCCATCTGTAATTCCAATTCTAGGCAAAGGTAAAATACAAAATTCTAAG
ATAAAGAATATAGCACGCCTTGGGGACTGAGAAATTTAAAAAATAAGTGAAAATTCACTT
CAGTTAAGTGATTTTTAAGGGTTCCAATGAGGCATTTCAAAGGCATAAAAATTCAACTTT
CTTTTCACAACAATAAGAATTCTGGAGTAATAAGAGAATGTCAGGAGAAAGGCAAAGACA
CAAAAGAGTATGGGCCAAAAAGAATGTTTCTAATCCTTTTTGCTATAAAGTCCTTAAGTG
AGATAGAGGTTTCTGTCTCTGTGAAGGAAATCAAGATGATTATAGAAAGTGGCCTTTCAT
GCTTGCTGTAATGAAATGCTAATTTCCCTCACACCTCAGAAGCCCTTGTCCCTAACGATC
TGGTGATGCAGGTGGGTTTTCGCCTTGTGGTTGTTGTGGTTATTTCGTTTTGTGGTTATT
GTCTTGTCTTGGTTTTTATGACTGTCTGTATAATGGGCTATCTCTTTTTTTAGAGATCCA
TTACAAATTGAGGTAGAACTCTATATCTCCATTTCTATGAAATGTCAATGGAATATTTCA
GGCTTTCTGGAAATGGAAATGAGATAATTTGGGAATTAATTGTGGAAATCTTGAAGCATT
GTGTATCAGTTGATACAGTGAAACTGGCCCGTGACATGTTCTGAAAGAGAAACTAGGTAG
AAAATAGAATAACTAAATTGTAAAATGGAGGCTGTCAGAAAACTAAACCAAAGTTTAGTT
TTATCTGTAGGAAGGTTGGGATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCCCAGCCCTAATGTGAGTAGTGCTGAGGTGGAGAAATCCTGCCTTAGAGTTACCAC
TTGGTGAGGACCCAAGCGATTATTTTATTCTAAATCTTTAAAAAACTTACATAGTCCTTA
GTCATACTCTGCTTAGTAAAAACCTAGCATATAGACATCAGTTTCAAACAGATAAACATG
ATTGTCAAAGTTCCTGTAAACGTCGAGCCCCTGTGGAAATTTAAATGGAAGGGTGTCTAG
GTGAGACCATTAAAATAGACACATTGGAAACCTTTATTAAGTTAAATTTTATTAGAAAAC
GTCTCTGAAATTGTGTCAGTCTGTAGGCATGTGAAAAATTTTAGGGCTTTTCTTTGAAAA
GCATCTCTCTTTCAAAAGGCTAAGCATACCTCACAGGTCACTATTTTTAAAAAATTGAAA
ATGCCTTTAAAGCCATCTGTAATTCCAATTCTAGGCAAAGGTAAAATACAAAATTCTAAG
ATAAAGAATATAGCACGCCTTGGGGACTGAGAAATTTAAAAAATAAGTGAAAATTCACTT
CAGTTAAGTGATTTTTAAGGGTTCCAATGAGGCATTTCAAAGGCATAAAAATTCAACTTT
CTTTTCACAACAATAAGAATTCTGGAGTAATAAGAGAATGTCAGGAGAAAGGCAAAGACA
CAAAAGAGTATGGGCCAAAAAGAATGTTTCTAATCCTTTTTGCTATAAAGTCCTTAAGTG
AGATAGAGGTTTCTGTCTCTGTGAAGGAAATCAAGATGATTATAGAAAGTGGCCTTTCAT
GCTTGCTGTAATGAAATGCTAATTTCCCTCACACCTCAGAAGCCCTTGTCCCTAACGATC
TGGTGATGCAGGTGGGTTTTCGCCTTGTGGTTGTTGTGGTTATTTCGTTTTGTGGTTATT
GTCTTGTCTTGGTTTTTATGACTGTCTGTATAATGGGCTATCTCTTTTTTTAGAGATCCA
TTACAAATTGAGGTAGAACTCTATATCTCCATTTCTATGAAATGTCAATGGAATATTTCA
GGCTTTCTGGAAATGGAAATGAGATAATTTGGGAATTAATTGTGGAAATCTTGAAGCATT
GTGTATCAGTTGATACAGTGAAACTGGCCCGTGACATGTTCTGAAAGAGAAACTAGGTAG
AAAATAGAATAACTAAATTGTAAAATGGAGGCTGTCAGAAAACTAAACCAAAGTTTAGTT
TTATCTGTAGGAAGGTTGGGATAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               649-807, + strand, RNAz p=0.938664
               

               
               932-1049, + strand, RNAz p=0.960808

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               649-807, + strand, RNAz p=0.938664
               

               
               932-1049, + strand, RNAz p=0.960808

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               134-861, gnl|bosTau2|chrX (40791367-40790632)
               

               
               134-861, gnl|Hg17|chrX (14620851-14620090)
               


               
               894-1203, gnl|bosTau2|chrX (40790622-40790315)
               

               
               894-1203, gnl|Hg17|chrX (14620080-14619725)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               134-861, gnl|bosTau2|chrX (40791367-40790632)
               

               
               134-861, gnl|Hg17|chrX (14620851-14620090)
               


               
               894-1203, gnl|bosTau2|chrX (40790622-40790315)
               

               
               894-1203, gnl|Hg17|chrX (14620080-14619725)

	649-807, + strand, RNAz p=0.938664
	932-1049, + strand, RNAz p=0.960808

	134-861, gnl\|bosTau2\|chrX (40791367-40790632)
	134-861, gnl\|Hg17\|chrX (14620851-14620090)

	894-1203, gnl\|bosTau2\|chrX (40790622-40790315)
	894-1203, gnl\|Hg17\|chrX (14620080-14619725)