Non-Coding RNA Search

Ss1.1-Pig4-TMW8033O16.5

Sequence:


               
               CAACGCCGTGGCCGCCGCGCTCCGCGGAGTGACCGAAAGGCCGCTGCCGCCCCGCCGCGC
TCGCCGTCGCCCTGGTCCTCTCGCCGCGAGGTGCATGATGCAGAACGTCCACCTGGCGCC
CGACACAGACGAGGATGACCTTTATTCCGGTTACAATGACCACAACCCAACCTATGACAC
CGAGGAGTTGGAGAATGACACAGCTTTTCAGCAAGCCGTGAGAACTAGCCATGGCCGGAG
ACCTCCAATAACCGCTAAAGTACCGAGCACAGCAGTTGCTAGACCCGTAGCTACTGGATG
TGGGTCCAAGACCTCCCTGGCGTCGTCAATGGGAAGACCCGGGACAGGGGCTCTCCAGGA
TGGAGTGACCAGACCCATGACGGCCGTGCGAGCAGCCGGATTTACCAAGGCGGCGTTGAG
AGGCTCTGCACTCGACCCCCTCGGTCAGGCCCGTGGCCCCGCGCCGCCCCTGGAGGCCAG
GAGCGAGGACAGTCCGGAAGAAAAGATTCGACAATTAGAGAAGAAAGTAAACGAGCTGGT
GGAGGAAAGCTGTGTCGCCAGCAGCTGTGGAGACTTAAAACTGGCCTTGGAAAAGGCAAA
AGATGCGGGAAGAAAAGAGCGAGTGCTGGTGAGACAACGAGAACAAGTTGCAAGTCCAGA
AAACATCAACTTGGACTTAACTTACTCGGTTCTCTTCACCTTGGCCAGTCAGTATTCAGC
GAATGAAATGTATGCCGAAGCGTTAAACACGTATCAAGTTATCGTGAAAAACAAGATGTT
TAGCAATGCAGGACGGTTGAAAGTGAATATGGGAAATATTTATTTAAAGCAAAGAAATTA
TTCCAAAGCCATTAAATTCTACCGAATGGCCTTAGATCAGATTCCAAGCGTCCATAAAGA
AATGAGGATTAAAATTATGCAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACGCCGTGGCCGCCGCGCTCCGCGGAGTGACCGAAAGGCCGCTGCCGCCCCGCCGCGC
TCGCCGTCGCCCTGGTCCTCTCGCCGCGAGGTGCATGATGCAGAACGTCCACCTGGCGCC
CGACACAGACGAGGATGACCTTTATTCCGGTTACAATGACCACAACCCAACCTATGACAC
CGAGGAGTTGGAGAATGACACAGCTTTTCAGCAAGCCGTGAGAACTAGCCATGGCCGGAG
ACCTCCAATAACCGCTAAAGTACCGAGCACAGCAGTTGCTAGACCCGTAGCTACTGGATG
TGGGTCCAAGACCTCCCTGGCGTCGTCAATGGGAAGACCCGGGACAGGGGCTCTCCAGGA
TGGAGTGACCAGACCCATGACGGCCGTGCGAGCAGCCGGATTTACCAAGGCGGCGTTGAG
AGGCTCTGCACTCGACCCCCTCGGTCAGGCCCGTGGCCCCGCGCCGCCCCTGGAGGCCAG
GAGCGAGGACAGTCCGGAAGAAAAGATTCGACAATTAGAGAAGAAAGTAAACGAGCTGGT
GGAGGAAAGCTGTGTCGCCAGCAGCTGTGGAGACTTAAAACTGGCCTTGGAAAAGGCAAA
AGATGCGGGAAGAAAAGAGCGAGTGCTGGTGAGACAACGAGAACAAGTTGCAAGTCCAGA
AAACATCAACTTGGACTTAACTTACTCGGTTCTCTTCACCTTGGCCAGTCAGTATTCAGC
GAATGAAATGTATGCCGAAGCGTTAAACACGTATCAAGTTATCGTGAAAAACAAGATGTT
TAGCAATGCAGGACGGTTGAAAGTGAATATGGGAAATATTTATTTAAAGCAAAGAAATTA
TTCCAAAGCCATTAAATTCTACCGAATGGCCTTAGATCAGATTCCAAGCGTCCATAAAGA
AATGAGGATTAAAATTATGCAGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55639503|ref|XP_509561.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55639503|ref|XP_509561.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               583-690, + strand, RNAz p=0.738566
               

               
               773-907, - strand, RNAz p=0.940672

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               583-690, + strand, RNAz p=0.738566
               

               
               773-907, - strand, RNAz p=0.940672

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               583-690, gnl|bosTau2|chr12 (19955079-19954972)
               

               
               583-690, gnl|canFam2|chr25 (20498157-20498034)
               

               
               583-690, gnl|danRer3|chr17 (35079536-35079662)
               

               
               583-690, gnl|galGal2|chr1 (170809116-170808994)
               

               
               583-690, gnl|hg17|chr13 (20069150-20069274)
               

               
               583-690, gnl|Hg17|chr13 (20069153-20069260)
               

               
               583-690, gnl|loxAfr1|scaffold_9165 (32494-32621)
               

               
               583-690, gnl|mm7|chr14 (52309787-52309907)
               

               
               583-690, gnl|Mm7|chr14 (52309790-52309897)
               

               
               583-690, gnl|monDom2|scaffold_15 (28416511-28416635)
               

               
               583-690, gnl|oryCun1|scaffold_127930 (10129-10005)
               

               
               583-690, gnl|panTro1|chr14 (18973717-18973841)
               

               
               583-690, gnl|rheMac2|chr17 (1006182-1006058)
               

               
               583-690, gnl|rn3|chr15 (36503857-36503981)
               

               
               583-690, gnl|tetNig1|chr2 (17686401-17686284)
               

               
               583-690, gnl|xenTro1|scaffold_327 (1050998-1051114)
               


               
               773-907, gnl|bosTau2|chr12 (19953276-19953143)
               

               
               773-907, gnl|Hg17|chr13 (20071573-20071705)
               

               
               773-907, gnl|Mm7|chr14 (52313465-52313593)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               583-690, gnl|bosTau2|chr12 (19955079-19954972)
               

               
               583-690, gnl|canFam2|chr25 (20498157-20498034)
               

               
               583-690, gnl|danRer3|chr17 (35079536-35079662)
               

               
               583-690, gnl|galGal2|chr1 (170809116-170808994)
               

               
               583-690, gnl|hg17|chr13 (20069150-20069274)
               

               
               583-690, gnl|Hg17|chr13 (20069153-20069260)
               

               
               583-690, gnl|loxAfr1|scaffold_9165 (32494-32621)
               

               
               583-690, gnl|mm7|chr14 (52309787-52309907)
               

               
               583-690, gnl|Mm7|chr14 (52309790-52309897)
               

               
               583-690, gnl|monDom2|scaffold_15 (28416511-28416635)
               

               
               583-690, gnl|oryCun1|scaffold_127930 (10129-10005)
               

               
               583-690, gnl|panTro1|chr14 (18973717-18973841)
               

               
               583-690, gnl|rheMac2|chr17 (1006182-1006058)
               

               
               583-690, gnl|rn3|chr15 (36503857-36503981)
               

               
               583-690, gnl|tetNig1|chr2 (17686401-17686284)
               

               
               583-690, gnl|xenTro1|scaffold_327 (1050998-1051114)
               


               
               773-907, gnl|bosTau2|chr12 (19953276-19953143)
               

               
               773-907, gnl|Hg17|chr13 (20071573-20071705)
               

               
               773-907, gnl|Mm7|chr14 (52313465-52313593)

	583-690, + strand, RNAz p=0.738566
	773-907, - strand, RNAz p=0.940672

	583-690, gnl\|bosTau2\|chr12 (19955079-19954972)
	583-690, gnl\|canFam2\|chr25 (20498157-20498034)
	583-690, gnl\|danRer3\|chr17 (35079536-35079662)
	583-690, gnl\|galGal2\|chr1 (170809116-170808994)
	583-690, gnl\|hg17\|chr13 (20069150-20069274)
	583-690, gnl\|Hg17\|chr13 (20069153-20069260)
	583-690, gnl\|loxAfr1\|scaffold_9165 (32494-32621)
	583-690, gnl\|mm7\|chr14 (52309787-52309907)
	583-690, gnl\|Mm7\|chr14 (52309790-52309897)
	583-690, gnl\|monDom2\|scaffold_15 (28416511-28416635)
	583-690, gnl\|oryCun1\|scaffold_127930 (10129-10005)
	583-690, gnl\|panTro1\|chr14 (18973717-18973841)
	583-690, gnl\|rheMac2\|chr17 (1006182-1006058)
	583-690, gnl\|rn3\|chr15 (36503857-36503981)
	583-690, gnl\|tetNig1\|chr2 (17686401-17686284)
	583-690, gnl\|xenTro1\|scaffold_327 (1050998-1051114)

	773-907, gnl\|bosTau2\|chr12 (19953276-19953143)
	773-907, gnl\|Hg17\|chr13 (20071573-20071705)
	773-907, gnl\|Mm7\|chr14 (52313465-52313593)