Non-Coding RNA Search

Ss1.1-Pig4-TMW8033P14.3

Sequence:


               
               GATAGGGAGAGAGAGCTAGATGGTGGCGAGGGCATATAATAATTAGCATTTTCAGTAACA
ACATCTGTTGCTGGCAGTATTGGCAGCATTGTAGGAGAAAGCAATCATTTAAAATTAGCT
AATGCTCAGTTTAAGTGCCACGCAATGTACTGACATTTTCAATATTTTTACTAGTTTTCT
GTTTTCTCATTTCAATAAATATGTGGTTTTGAGTTTGCATGAATGCCTTGTATTATATTT
AAAAGAGTCTTCAGACCTTCTCTCCAAGTTGATCTGGTACTACAGCTTGTAAATCCAGTG
AGACGGACTGGCATTGATCCAAATGATCGTAGAGGTCCGTTATCCAGCGCCCTTGAAGTG
GATCTTTGTGTGTTTGATCCTTCTTGATTTAGATCTCCTCCCAGTTAGAACCTCCCCCGC
AACCTGCAAGACACAATTTCCTCCCAGATCTTCTTCTCTGACCTTGATATGTCATCCTGC
ACTTCCTACTTGAGGTTTAAATGTCAATATAAACCTTAAAATTTTAGTGGCGCTTATTAA
GTTAATTAGATTAATTTGACAGGTATCCATCTCATTGACTCCTCTCCTGTGAATCCTGAC
TGGTAAAGAGATGGGTTGTCCACCAAGTCTCAGGGGCTTCTGCTGCACCTTGTTGTGCCC
TTGATCTCCTTTACGGCCTTTGCTGTGCACTTGTTTGCTGGTGGGAAGTTTTTCAAAGTG
AAAAAAAAAAAAAGTCATCTGTATTTTTTTAAAGGTGAAACTCATCAGTGAATCAACATT
TGAATCACCTACTAAGATACAAAACAAATTTGGAGTCTGTGTAAGTGCTGATGAGCATCA
GTGCAGAACCAGAAATTATGTTCTGGAAATATTTTGATGAGCTGAAATATTTTCCATGTA
TGTCTCGGTAGGCCTGTGTTTAACAAACTGGCTCTCTGTTAAACCCTGTTCAGGGAGATA
CTAGAATGTCTACTGTGAACATGATTTCTGTGGTCCAATTAGTTTGGAAAATTCTGCAAA
TTGTGTCTTCCT------------------------------------------------
------------------------------------AATTTGCCTTGAGTTGGTTTTTAT
CATGGAAATCAATTTAGGAAATACTGTTCCAGTTATCCCAAAGTTTTCCTGCTATTTCTG
TTTGTTGAAGTTTGCAGAAAGGGCCTCTAGGTAAAGGCTAGGTGTCTGATTTATAATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAGGGAGAGAGAGCTAGATGGTGGCGAGGGCATATAATAATTAGCATTTTCAGTAACA
ACATCTGTTGCTGGCAGTATTGGCAGCATTGTAGGAGAAAGCAATCATTTAAAATTAGCT
AATGCTCAGTTTAAGTGCCACGCAATGTACTGACATTTTCAATATTTTTACTAGTTTTCT
GTTTTCTCATTTCAATAAATATGTGGTTTTGAGTTTGCATGAATGCCTTGTATTATATTT
AAAAGAGTCTTCAGACCTTCTCTCCAAGTTGATCTGGTACTACAGCTTGTAAATCCAGTG
AGACGGACTGGCATTGATCCAAATGATCGTAGAGGTCCGTTATCCAGCGCCCTTGAAGTG
GATCTTTGTGTGTTTGATCCTTCTTGATTTAGATCTCCTCCCAGTTAGAACCTCCCCCGC
AACCTGCAAGACACAATTTCCTCCCAGATCTTCTTCTCTGACCTTGATATGTCATCCTGC
ACTTCCTACTTGAGGTTTAAATGTCAATATAAACCTTAAAATTTTAGTGGCGCTTATTAA
GTTAATTAGATTAATTTGACAGGTATCCATCTCATTGACTCCTCTCCTGTGAATCCTGAC
TGGTAAAGAGATGGGTTGTCCACCAAGTCTCAGGGGCTTCTGCTGCACCTTGTTGTGCCC
TTGATCTCCTTTACGGCCTTTGCTGTGCACTTGTTTGCTGGTGGGAAGTTTTTCAAAGTG
AAAAAAAAAAAAAGTCATCTGTATTTTTTTAAAGGTGAAACTCATCAGTGAATCAACATT
TGAATCACCTACTAAGATACAAAACAAATTTGGAGTCTGTGTAAGTGCTGATGAGCATCA
GTGCAGAACCAGAAATTATGTTCTGGAAATATTTTGATGAGCTGAAATATTTTCCATGTA
TGTCTCGGTAGGCCTGTGTTTAACAAACTGGCTCTCTGTTAAACCCTGTTCAGGGAGATA
CTAGAATGTCTACTGTGAACATGATTTCTGTGGTCCAATTAGTTTGGAAAATTCTGCAAA
TTGTGTCTTCCT------------------------------------------------
------------------------------------AATTTGCCTTGAGTTGGTTTTTAT
CATGGAAATCAATTTAGGAAATACTGTTCCAGTTATCCCAAAGTTTTCCTGCTATTTCTG
TTTGTTGAAGTTTGCAGAAAGGGCCTCTAGGTAAAGGCTAGGTGTCTGATTTATAATTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               46-165, - strand, RNAz p=0.537484

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               46-165, - strand, RNAz p=0.537484

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               7-632, gnl|bosTau2|chr9 (47142949-47142331)
               

               
               7-632, gnl|Hg17|chr6 (144969148-144969743)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-632, gnl|bosTau2|chr9 (47142949-47142331)
               

               
               7-632, gnl|Hg17|chr6 (144969148-144969743)

	7-632, gnl\|bosTau2\|chr9 (47142949-47142331)
	7-632, gnl\|Hg17\|chr6 (144969148-144969743)