Ss1.1-Pig4-TMW8034A15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACATTCCCCACGACCTCTTCACGGAGATGGATGAGCTCTGCTACAGAGACGGAGAGGA GTATGAGTGGAAGGAGACTGCCAGATGGCTGAAATTTGAGGAGGATGTTGAAGATGGTGG AGACCGGTGGAGTAAACCTTATGTGGCAACCCTCTCTCTGCACAGCCTTTTTGAACTGAG AAGTTGCATCCTAAATGGAACAGTCATGCTGGATATGAGAGCAAGCACTCTAGATGAAAT AGCAGATATGGTGCTGGACAACATGATCGCCTCTGGCCAGTTGGATGAGTCCATAAGAGA GAATGTCAGATAAGCCCTCCTGAAGAGGCATCATCACCAGAATGAGAAAAGGTTCACCAG TCGGATTCCCCTTGTTCGATCTTTTGCAGATATAGGCAAGAAACATTCTGACCCTCACTT GCTTGAGAGGAATGGTATGTTGGCCTCTCCACAGTCTGCACCCGGAAACTTGGACAATAG TAAAAGTGGGGAAATTAAAGGTAATGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGA CTTCAGCAAGGTTGATATGAATTTCATGAGAAAAATTCCTTCGGGAGCCGAGGCATCCAA TGTTCTGGTGGGAGAAGTGGATTTTTTGGAAAGACCTATCATTGCGTTTGTGAGACTGGC TCCCGCTGTTCTTCTCTCAGGGCTAACCGAGGTCCCTGTTCCTACAAGGTTTTTGTTTCT GTTACTGGGTCCAGCAGGCAAGGCACCGCAGTACCATGAAATCGGACGGTCAATAGCCAC CCTCATGACGGATGAGATTTTTCATGATGTAGCTTATAAAGCAAAAGACAGGAATGACCT CTTATCTGGAATTGACGAGTTTTTAGATCAAGTGACTGTCCTCCCTCCAGGAGAGTGGGA CCCTTCCATCCGCATAGAGCCGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACATTCCCCACGACCTCTTCACGGAGATGGATGAGCTCTGCTACAGAGACGGAGAGGA GTATGAGTGGAAGGAGACTGCCAGATGGCTGAAATTTGAGGAGGATGTTGAAGATGGTGG AGACCGGTGGAGTAAACCTTATGTGGCAACCCTCTCTCTGCACAGCCTTTTTGAACTGAG AAGTTGCATCCTAAATGGAACAGTCATGCTGGATATGAGAGCAAGCACTCTAGATGAAAT AGCAGATATGGTGCTGGACAACATGATCGCCTCTGGCCAGTTGGATGAGTCCATAAGAGA GAATGTCAGATAAGCCCTCCTGAAGAGGCATCATCACCAGAATGAGAAAAGGTTCACCAG TCGGATTCCCCTTGTTCGATCTTTTGCAGATATAGGCAAGAAACATTCTGACCCTCACTT GCTTGAGAGGAATGGTATGTTGGCCTCTCCACAGTCTGCACCCGGAAACTTGGACAATAG TAAAAGTGGGGAAATTAAAGGTAATGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGA CTTCAGCAAGGTTGATATGAATTTCATGAGAAAAATTCCTTCGGGAGCCGAGGCATCCAA TGTTCTGGTGGGAGAAGTGGATTTTTTGGAAAGACCTATCATTGCGTTTGTGAGACTGGC TCCCGCTGTTCTTCTCTCAGGGCTAACCGAGGTCCCTGTTCCTACAAGGTTTTTGTTTCT GTTACTGGGTCCAGCAGGCAAGGCACCGCAGTACCATGAAATCGGACGGTCAATAGCCAC CCTCATGACGGATGAGATTTTTCATGATGTAGCTTATAAAGCAAAAGACAGGAATGACCT CTTATCTGGAATTGACGAGTTTTTAGATCAAGTGACTGTCCTCCCTCCAGGAGAGTGGGA CCCTTCCATCCGCATAGAGCCGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 549-667, + strand, RNAz p=0.542089 | |
| 549-667, + strand, RNAz p=0.594064 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 549-667, + strand, RNAz p=0.542089 | |
| 549-667, + strand, RNAz p=0.594064 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 243-440, gnl|bosTau2|chr27 (28976115-28975918) | |
| 243-440, gnl|canFam2|chr36 (10281314-10281523) | |
| 243-440, gnl|danRer3|chr16 (32384888-32384679) | |
| 243-440, gnl|dasNov1|scaffold_7653 (89839-89631) | |
| 243-440, gnl|echTel1|scaffold_185577 (6152-6361) | |
| 243-440, gnl|fr1|chrUn (173356119-173355916) | |
| 243-440, gnl|galGal2|chr2 (37588427-37588223) | |
| 243-440, gnl|hg17|chr2 (162544875-162545085) | |
| 243-440, gnl|Hg17|chr2 (162544888-162545085) | |
| 243-440, gnl|loxAfr1|scaffold_7716 (68066-68276) | |
| 243-440, gnl|mm7|chr2 (62164918-62165124) | |
| 243-440, gnl|Mm7|chr2 (62164929-62165124) | |
| 243-440, gnl|monDom2|scaffold_2 (56379056-56379268) | |
| 243-440, gnl|oryCun1|scaffold_196093 (61041-61251) | |
| 243-440, gnl|panTro1|chr13 (51937184-51937394) | |
| 243-440, gnl|rheMac2|chr12 (25429283-25429493) | |
| 243-440, gnl|rn3|chr3 (44073056-44073261) | |
| 243-440, gnl|tetNig1|chr2 (11970276-11970075) | |
| 243-440, gnl|xenTro1|scaffold_311 (88376-88178) | |
| 244-436, gnl|bosTau2|chr22 (5793224-5793416) | |
| 244-436, gnl|Hg17|chr3 (27450601-27450409) | |
| 244-436, gnl|Mm7|chr14 (12552582-12552774) | |
| 549-710, gnl|bosTau2|chr22 (5803122-5803283) | |
| 549-710, gnl|canFam2|chr23 (19784147-19784248) | |
| 549-710, gnl|dasNov1|scaffold_8681 (40858-40959) | |
| 549-710, gnl|hg17|chr1 (25330288-25330389) | |
| 549-710, gnl|Hg17|chr3 (27438276-27438115) | |
| 549-710, gnl|loxAfr1|scaffold_20036 (7022-7123) | |
| 549-710, gnl|mm7|chr14 (12561367-12561468) | |
| 549-710, gnl|Mm7|chr14 (12561323-12561484) | |
| 549-710, gnl|oryCun1|scaffold_192951 (4108-4008) | |
| 549-710, gnl|panTro1|chr1 (25734722-25734823) | |
| 549-710, gnl|rheMac2|chr1 (27889430-27889528) | |
| 549-710, gnl|rn3|chr15 (12109175-12109074) | |
| 795-924, gnl|bosTau2|chr22 (5806391-5806520) | |
| 795-924, gnl|canFam2|chr23 (19786594-19786432) | |
| 795-924, gnl|danRer3|chr16 (32370435-32370588) | |
| 795-924, gnl|dasNov1|scaffold_8681 (44309-44147) | |
| 795-924, gnl|echTel1|scaffold_227036 (2800-2621) | |
| 795-924, gnl|fr1|chrUn (223445760-223445920) | |
| 795-924, gnl|galGal2|chr2 (37576321-37576483) | |
| 795-924, gnl|hg17|chr3 (27434978-27435139) | |
| 795-924, gnl|Hg17|chr3 (27435129-27435000) | |
| 795-924, gnl|loxAfr1|scaffold_7254 (73083-73245) | |
| 795-924, gnl|mm7|chr14 (12570295-12570133) | |
| 795-924, gnl|Mm7|chr14 (12570142-12570271) | |
| 795-924, gnl|monDom2|scaffold_7 (83216257-83216419) | |
| 795-924, gnl|oryCun1|scaffold_182755 (41923-41761) | |
| 795-924, gnl|panTro1|chr2 (28364522-28364683) | |
| 795-924, gnl|rheMac2|chr2 (169824103-169824264) | |
| 795-924, gnl|rn3|chr15 (12104957-12105119) | |
| 795-924, gnl|tetNig1|chr21_random (2602397-2602557) | |
| 795-924, gnl|xenTro1|scaffold_43 (2840825-2840987) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 243-440, gnl|bosTau2|chr27 (28976115-28975918) | |
| 243-440, gnl|canFam2|chr36 (10281314-10281523) | |
| 243-440, gnl|danRer3|chr16 (32384888-32384679) | |
| 243-440, gnl|dasNov1|scaffold_7653 (89839-89631) | |
| 243-440, gnl|echTel1|scaffold_185577 (6152-6361) | |
| 243-440, gnl|fr1|chrUn (173356119-173355916) | |
| 243-440, gnl|galGal2|chr2 (37588427-37588223) | |
| 243-440, gnl|hg17|chr2 (162544875-162545085) | |
| 243-440, gnl|Hg17|chr2 (162544888-162545085) | |
| 243-440, gnl|loxAfr1|scaffold_7716 (68066-68276) | |
| 243-440, gnl|mm7|chr2 (62164918-62165124) | |
| 243-440, gnl|Mm7|chr2 (62164929-62165124) | |
| 243-440, gnl|monDom2|scaffold_2 (56379056-56379268) | |
| 243-440, gnl|oryCun1|scaffold_196093 (61041-61251) | |
| 243-440, gnl|panTro1|chr13 (51937184-51937394) | |
| 243-440, gnl|rheMac2|chr12 (25429283-25429493) | |
| 243-440, gnl|rn3|chr3 (44073056-44073261) | |
| 243-440, gnl|tetNig1|chr2 (11970276-11970075) | |
| 243-440, gnl|xenTro1|scaffold_311 (88376-88178) | |
| 244-436, gnl|bosTau2|chr22 (5793224-5793416) | |
| 244-436, gnl|Hg17|chr3 (27450601-27450409) | |
| 244-436, gnl|Mm7|chr14 (12552582-12552774) | |
| 549-710, gnl|bosTau2|chr22 (5803122-5803283) | |
| 549-710, gnl|canFam2|chr23 (19784147-19784248) | |
| 549-710, gnl|dasNov1|scaffold_8681 (40858-40959) | |
| 549-710, gnl|hg17|chr1 (25330288-25330389) | |
| 549-710, gnl|Hg17|chr3 (27438276-27438115) | |
| 549-710, gnl|loxAfr1|scaffold_20036 (7022-7123) | |
| 549-710, gnl|mm7|chr14 (12561367-12561468) | |
| 549-710, gnl|Mm7|chr14 (12561323-12561484) | |
| 549-710, gnl|oryCun1|scaffold_192951 (4108-4008) | |
| 549-710, gnl|panTro1|chr1 (25734722-25734823) | |
| 549-710, gnl|rheMac2|chr1 (27889430-27889528) | |
| 549-710, gnl|rn3|chr15 (12109175-12109074) | |
| 795-924, gnl|bosTau2|chr22 (5806391-5806520) | |
| 795-924, gnl|canFam2|chr23 (19786594-19786432) | |
| 795-924, gnl|danRer3|chr16 (32370435-32370588) | |
| 795-924, gnl|dasNov1|scaffold_8681 (44309-44147) | |
| 795-924, gnl|echTel1|scaffold_227036 (2800-2621) | |
| 795-924, gnl|fr1|chrUn (223445760-223445920) | |
| 795-924, gnl|galGal2|chr2 (37576321-37576483) | |
| 795-924, gnl|hg17|chr3 (27434978-27435139) | |
| 795-924, gnl|Hg17|chr3 (27435129-27435000) | |
| 795-924, gnl|loxAfr1|scaffold_7254 (73083-73245) | |
| 795-924, gnl|mm7|chr14 (12570295-12570133) | |
| 795-924, gnl|Mm7|chr14 (12570142-12570271) | |
| 795-924, gnl|monDom2|scaffold_7 (83216257-83216419) | |
| 795-924, gnl|oryCun1|scaffold_182755 (41923-41761) | |
| 795-924, gnl|panTro1|chr2 (28364522-28364683) | |
| 795-924, gnl|rheMac2|chr2 (169824103-169824264) | |
| 795-924, gnl|rn3|chr15 (12104957-12105119) | |
| 795-924, gnl|tetNig1|chr21_random (2602397-2602557) | |
| 795-924, gnl|xenTro1|scaffold_43 (2840825-2840987) |