Non-Coding RNA Search

Ss1.1-Pig4-TMW8034D01.5

Sequence:


               
               GTTCTTCTTCATCTTAAGGGCATCTTTGTGTGTATGAGTGTGTGGTTGCATGGAAGTTCC
CCGGGCCAGGGATTGAATCCGAGCCTCAGCTGCAACAACACCGAATCCTTTAACCCCTTG
CGCCAGGGATCAAACCTGAGGCACTGTAGTCGGATTCTTAACTCACTGTGCCACAGTGGG
AACTCCTCAAGGGTATCTTAAAGTGACCAACCATCCTGGCTTGCCTGAAACTGAAGGGTT
TCCTAGGGCATGAGACTTTTAGCACTGTAATTGCGGAAGTTCCAGGCAAATAGTAATGAG
TTAATTTTCCACTACCTTTACACCGTTCAAATCTTACCCTGATTTTATAACATATTAGAG
GCATTTGAAGGGTTCTTTTCTATAAACAGTAATGAATAGATCAACTAGAAATTGTAATGG
TAAACTTAATACTGAACTTCTAAGAAGAGGAAAGCACTTTTTCCTCCTCTTTGGTAGCAC
TGCAGGAAATGGCAACAGACTGGCTTTAAAAATAATGAGTTTAAAAAAAATACTTTATTT
AGACTTAGTCTTCCATCCACTCTATTCTAATCATTGTATGAGAAGATCACAGGAAATACA
ACAAGACTAGAGGACTGCGTTCCTTTTATGCCAAGTCAACTAACTCTTCTGGGTCACAGT
TTTGCAGCAACAAAATAAAAGTAGTTATTTATAAATGGTATTAAAGATAGAAAGCATAGT
GCTATATATATATATATATATTTTTTTTTTTAAATCTAAGCAGGAAAAAAAACCCACCAT
GATGATATTTTCAAGCAAAGTTTCTACAAATCAGCCCCAATTCCAAAGACTAAGACCACC
TAAGATTACATTTCAAGAAGAAATTTTTCATGAGACTCTTAATAAGATTTCAGAGCTGGA
GGAAACCTAAAAGAGCATGCCCAGTGTTCCCATTTTCCAAAGGAAGAAATCAAAGACTCA
AAGGCTTATTAACTTTTCCAAAGTCACACATCTAGGCCTTGGCAGAACACTTAATGTAGG
GAAAAAAATGAGTTGACCAATAGGCCTTGGGACAAGTGTTGACCTAGGCCAGATGCTCCA
CTTCTGTAGCCACTTGAACCGGTTTTTCTTCAACGAATCTGCATCTGCTTGATTTCATTG
AAATCATGTCTGCCAAAATAACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTTCTTCATCTTAAGGGCATCTTTGTGTGTATGAGTGTGTGGTTGCATGGAAGTTCC
CCGGGCCAGGGATTGAATCCGAGCCTCAGCTGCAACAACACCGAATCCTTTAACCCCTTG
CGCCAGGGATCAAACCTGAGGCACTGTAGTCGGATTCTTAACTCACTGTGCCACAGTGGG
AACTCCTCAAGGGTATCTTAAAGTGACCAACCATCCTGGCTTGCCTGAAACTGAAGGGTT
TCCTAGGGCATGAGACTTTTAGCACTGTAATTGCGGAAGTTCCAGGCAAATAGTAATGAG
TTAATTTTCCACTACCTTTACACCGTTCAAATCTTACCCTGATTTTATAACATATTAGAG
GCATTTGAAGGGTTCTTTTCTATAAACAGTAATGAATAGATCAACTAGAAATTGTAATGG
TAAACTTAATACTGAACTTCTAAGAAGAGGAAAGCACTTTTTCCTCCTCTTTGGTAGCAC
TGCAGGAAATGGCAACAGACTGGCTTTAAAAATAATGAGTTTAAAAAAAATACTTTATTT
AGACTTAGTCTTCCATCCACTCTATTCTAATCATTGTATGAGAAGATCACAGGAAATACA
ACAAGACTAGAGGACTGCGTTCCTTTTATGCCAAGTCAACTAACTCTTCTGGGTCACAGT
TTTGCAGCAACAAAATAAAAGTAGTTATTTATAAATGGTATTAAAGATAGAAAGCATAGT
GCTATATATATATATATATATTTTTTTTTTTAAATCTAAGCAGGAAAAAAAACCCACCAT
GATGATATTTTCAAGCAAAGTTTCTACAAATCAGCCCCAATTCCAAAGACTAAGACCACC
TAAGATTACATTTCAAGAAGAAATTTTTCATGAGACTCTTAATAAGATTTCAGAGCTGGA
GGAAACCTAAAAGAGCATGCCCAGTGTTCCCATTTTCCAAAGGAAGAAATCAAAGACTCA
AAGGCTTATTAACTTTTCCAAAGTCACACATCTAGGCCTTGGCAGAACACTTAATGTAGG
GAAAAAAATGAGTTGACCAATAGGCCTTGGGACAAGTGTTGACCTAGGCCAGATGCTCCA
CTTCTGTAGCCACTTGAACCGGTTTTTCTTCAACGAATCTGCATCTGCTTGATTTCATTG
AAATCATGTCTGCCAAAATAACCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               196-312, - strand, RNAz p=0.951194

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-312, - strand, RNAz p=0.951194

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               196-1164, gnl|bosTau2|chr25 (17819285-17818340)
               

               
               196-1164, gnl|Hg17|chr16 (22004123-22005020)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               196-1164, gnl|bosTau2|chr25 (17819285-17818340)
               

               
               196-1164, gnl|Hg17|chr16 (22004123-22005020)

	196-1164, gnl\|bosTau2\|chr25 (17819285-17818340)
	196-1164, gnl\|Hg17\|chr16 (22004123-22005020)