Ss1.1-Pig4-TMW8034D03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCGAAGCCTTTTGGGCGGGGCCTGGACTGGCTGCTCCAAAGGCTGGGACTTCACATCGG AAACAAAACAGCGGCTGCTGGGGAAGGGACCTGGGCTGCGAGAGGTGGCGGCTGCGACGA GAAAGAACCTAATCCGGGAGCCTGCAAGTAAGAGCAACCTGTGAAGTTCTTAGAAAGCTT GGCCTGGAGGAGAACACATGAAAGAAAGAACCCCAGGAGGCTCTGATTTCTGTGAAAAAG TATTTCTATACGGTTGTTCCAATGACAGAGTTACCTGCACCCTTGTCCTACTTCCAGAAT GCCCAGATGTCCGAGGACAACCACCTGAGCAATACTGTACGTAGCCAGAATGACAGTAGA GAGCGGCATGAGCACAGCATCGAGAGGCGGAGGCGTGGCAACTCTGAGTCGTTATCCAAT GGCGGAGCCCAGGGAAACTCACGCCAGGTGGTGGAACAAGAAGAAGAGGAAGACGAGGAG CTGACGTTGAAATATGGCGCCAAACATGTGATCATGCTCTTTGTCCCTGTGACTCTATGT ATGGTGGTGGTTGTGGCCACCATCAAATCAGTCAGCTTTTATACCCGGAAGGATGGGCAG CTGATCTATACTCCATTTACAGAAGACACTGAGACTGTAGGGCAGAGAGCCCTGCACTCA ATTCTGAATGCTGCTATCATGATTAGTGTCATTGTCGTCATGACTATTCTCCTGGTGGTT CTCTATAAATACAGGTGCTATAAGGTCATCCATGCCTGGCTTATTATTTCATCCCTATTG TTGCTGTTCTTTTTCTCATTCATTTACTTGGGGGAAGTGTTTAAAACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCGAAGCCTTTTGGGCGGGGCCTGGACTGGCTGCTCCAAAGGCTGGGACTTCACATCGG AAACAAAACAGCGGCTGCTGGGGAAGGGACCTGGGCTGCGAGAGGTGGCGGCTGCGACGA GAAAGAACCTAATCCGGGAGCCTGCAAGTAAGAGCAACCTGTGAAGTTCTTAGAAAGCTT GGCCTGGAGGAGAACACATGAAAGAAAGAACCCCAGGAGGCTCTGATTTCTGTGAAAAAG TATTTCTATACGGTTGTTCCAATGACAGAGTTACCTGCACCCTTGTCCTACTTCCAGAAT GCCCAGATGTCCGAGGACAACCACCTGAGCAATACTGTACGTAGCCAGAATGACAGTAGA GAGCGGCATGAGCACAGCATCGAGAGGCGGAGGCGTGGCAACTCTGAGTCGTTATCCAAT GGCGGAGCCCAGGGAAACTCACGCCAGGTGGTGGAACAAGAAGAAGAGGAAGACGAGGAG CTGACGTTGAAATATGGCGCCAAACATGTGATCATGCTCTTTGTCCCTGTGACTCTATGT ATGGTGGTGGTTGTGGCCACCATCAAATCAGTCAGCTTTTATACCCGGAAGGATGGGCAG CTGATCTATACTCCATTTACAGAAGACACTGAGACTGTAGGGCAGAGAGCCCTGCACTCA ATTCTGAATGCTGCTATCATGATTAGTGTCATTGTCGTCATGACTATTCTCCTGGTGGTT CTCTATAAATACAGGTGCTATAAGGTCATCCATGCCTGGCTTATTATTTCATCCCTATTG TTGCTGTTCTTTTTCTCATTCATTTACTTGGGGGAAGTGTTTAAAACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 466-585, + strand, RNAz p=0.784654 | |
| 604-722, - strand, RNAz p=0.66043 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 466-585, + strand, RNAz p=0.784654 | |
| 604-722, - strand, RNAz p=0.66043 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 4-105, gnl|bosTau2|chr10 (59638887-59638988) | |
| 4-105, gnl|Hg17|chr14 (72672912-72673014) | |
| 4-105, gnl|Mm7|chr12 (81684204-81684303) | |
| 347-603, gnl|bosTau2|chr10 (59666033-59666289) | |
| 347-603, gnl|Hg17|chr14 (72707256-72707509) | |
| 347-603, gnl|Mm7|chr12 (81708339-81708592) | |
| 604-746, gnl|bosTau2|chr10 (59668420-59668562) | |
| 604-746, gnl|canFam2|chr8 (49565975-49566168) | |
| 604-746, gnl|danRer3|chr19 (37605372-37605210) | |
| 604-746, gnl|dasNov1|scaffold_4677 (304-497) | |
| 604-746, gnl|echTel1|scaffold_322281 (496-686) | |
| 604-746, gnl|fr1|chrUn (225870748-225870903) | |
| 604-746, gnl|galGal2|chr5 (23636137-23635942) | |
| 604-746, gnl|hg17|chr14 (72709988-72710180) | |
| 604-746, gnl|Hg17|chr14 (72710028-72710170) | |
| 604-746, gnl|loxAfr1|scaffold_17686 (57399-57591) | |
| 604-746, gnl|mm7|chr12 (81710770-81710954) | |
| 604-746, gnl|Mm7|chr12 (81710802-81710944) | |
| 604-746, gnl|monDom2|scaffold_8 (62082883-62082694) | |
| 604-746, gnl|oryCun1|scaffold_178066 (11568-11770) | |
| 604-746, gnl|panTro1|chr15 (72463282-72463474) | |
| 604-746, gnl|rheMac2|chr7 (136294071-136294263) | |
| 604-746, gnl|rn3|chr6 (107759684-107759868) | |
| 604-746, gnl|tetNig1|chr10 (11692984-11692832) | |
| 604-746, gnl|xenTro1|scaffold_799 (557943-557751) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-105, gnl|bosTau2|chr10 (59638887-59638988) | |
| 4-105, gnl|Hg17|chr14 (72672912-72673014) | |
| 4-105, gnl|Mm7|chr12 (81684204-81684303) | |
| 347-603, gnl|bosTau2|chr10 (59666033-59666289) | |
| 347-603, gnl|Hg17|chr14 (72707256-72707509) | |
| 347-603, gnl|Mm7|chr12 (81708339-81708592) | |
| 604-746, gnl|bosTau2|chr10 (59668420-59668562) | |
| 604-746, gnl|canFam2|chr8 (49565975-49566168) | |
| 604-746, gnl|danRer3|chr19 (37605372-37605210) | |
| 604-746, gnl|dasNov1|scaffold_4677 (304-497) | |
| 604-746, gnl|echTel1|scaffold_322281 (496-686) | |
| 604-746, gnl|fr1|chrUn (225870748-225870903) | |
| 604-746, gnl|galGal2|chr5 (23636137-23635942) | |
| 604-746, gnl|hg17|chr14 (72709988-72710180) | |
| 604-746, gnl|Hg17|chr14 (72710028-72710170) | |
| 604-746, gnl|loxAfr1|scaffold_17686 (57399-57591) | |
| 604-746, gnl|mm7|chr12 (81710770-81710954) | |
| 604-746, gnl|Mm7|chr12 (81710802-81710944) | |
| 604-746, gnl|monDom2|scaffold_8 (62082883-62082694) | |
| 604-746, gnl|oryCun1|scaffold_178066 (11568-11770) | |
| 604-746, gnl|panTro1|chr15 (72463282-72463474) | |
| 604-746, gnl|rheMac2|chr7 (136294071-136294263) | |
| 604-746, gnl|rn3|chr6 (107759684-107759868) | |
| 604-746, gnl|tetNig1|chr10 (11692984-11692832) | |
| 604-746, gnl|xenTro1|scaffold_799 (557943-557751) |